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Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia
Thermus sp. strain CCB_US3_UF1 is a thermophilic bacterium of the genus Thermus, a member of the family Thermaceae. Members of the genus Thermus have been widely used as a biological model for structural biology studies and to understand the mechanism of microbial adaptation under thermal environmen...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4599208/ https://www.ncbi.nlm.nih.gov/pubmed/26457128 http://dx.doi.org/10.1186/s40793-015-0053-6 |
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author | Teh, Beng Soon Lau, Nyok-Sean Ng, Fui Ling Abdul Rahman, Ahmad Yamin Wan, Xuehua Saito, Jennifer A. Hou, Shaobin Teh, Aik-Hong Najimudin, Nazalan Alam, Maqsudul |
author_facet | Teh, Beng Soon Lau, Nyok-Sean Ng, Fui Ling Abdul Rahman, Ahmad Yamin Wan, Xuehua Saito, Jennifer A. Hou, Shaobin Teh, Aik-Hong Najimudin, Nazalan Alam, Maqsudul |
author_sort | Teh, Beng Soon |
collection | PubMed |
description | Thermus sp. strain CCB_US3_UF1 is a thermophilic bacterium of the genus Thermus, a member of the family Thermaceae. Members of the genus Thermus have been widely used as a biological model for structural biology studies and to understand the mechanism of microbial adaptation under thermal environments. Here, we present the complete genome sequence of Thermus sp. CCB_US3_UF1 isolated from a hot spring in Malaysia, which is the fifth member of the genus Thermus with a completely sequenced and publicly available genome (Genbank date of release: December 2, 2011). Thermus sp. CCB_US3_UF1 has the third largest genome within the genus. The complete genome comprises of a chromosome of 2.26 Mb and a plasmid of 19.7 kb. The genome contains 2279 protein-coding and 54 RNA genes. In addition, its genome revealed potential pathways for the synthesis of secondary metabolites (isoprenoid) and pigments (carotenoid). ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0053-6) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4599208 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-45992082015-10-10 Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia Teh, Beng Soon Lau, Nyok-Sean Ng, Fui Ling Abdul Rahman, Ahmad Yamin Wan, Xuehua Saito, Jennifer A. Hou, Shaobin Teh, Aik-Hong Najimudin, Nazalan Alam, Maqsudul Stand Genomic Sci Short Genome Report Thermus sp. strain CCB_US3_UF1 is a thermophilic bacterium of the genus Thermus, a member of the family Thermaceae. Members of the genus Thermus have been widely used as a biological model for structural biology studies and to understand the mechanism of microbial adaptation under thermal environments. Here, we present the complete genome sequence of Thermus sp. CCB_US3_UF1 isolated from a hot spring in Malaysia, which is the fifth member of the genus Thermus with a completely sequenced and publicly available genome (Genbank date of release: December 2, 2011). Thermus sp. CCB_US3_UF1 has the third largest genome within the genus. The complete genome comprises of a chromosome of 2.26 Mb and a plasmid of 19.7 kb. The genome contains 2279 protein-coding and 54 RNA genes. In addition, its genome revealed potential pathways for the synthesis of secondary metabolites (isoprenoid) and pigments (carotenoid). ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0053-6) contains supplementary material, which is available to authorized users. BioMed Central 2015-10-08 /pmc/articles/PMC4599208/ /pubmed/26457128 http://dx.doi.org/10.1186/s40793-015-0053-6 Text en © Teh et al. 2015 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Teh, Beng Soon Lau, Nyok-Sean Ng, Fui Ling Abdul Rahman, Ahmad Yamin Wan, Xuehua Saito, Jennifer A. Hou, Shaobin Teh, Aik-Hong Najimudin, Nazalan Alam, Maqsudul Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia |
title | Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia |
title_full | Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia |
title_fullStr | Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia |
title_full_unstemmed | Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia |
title_short | Complete genome sequence of the thermophilic Thermus sp. CCB_US3_UF1 from a hot spring in Malaysia |
title_sort | complete genome sequence of the thermophilic thermus sp. ccb_us3_uf1 from a hot spring in malaysia |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4599208/ https://www.ncbi.nlm.nih.gov/pubmed/26457128 http://dx.doi.org/10.1186/s40793-015-0053-6 |
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