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WaspAtlas: a Nasonia vitripennis gene database and analysis platform

Nasonia vitripennis is a parasitoid wasp which is becoming an important model organism for parasitism, epigenetics, evolutionary and developmental genetics. WaspAtlas is a new gene database in which we have compiled annotation data from all available N. vitripennis releases along with a wealth of tr...

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Detalles Bibliográficos
Autores principales: Davies, Nathaniel J., Tauber, Eran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4599445/
https://www.ncbi.nlm.nih.gov/pubmed/26452372
http://dx.doi.org/10.1093/database/bav103
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author Davies, Nathaniel J.
Tauber, Eran
author_facet Davies, Nathaniel J.
Tauber, Eran
author_sort Davies, Nathaniel J.
collection PubMed
description Nasonia vitripennis is a parasitoid wasp which is becoming an important model organism for parasitism, epigenetics, evolutionary and developmental genetics. WaspAtlas is a new gene database in which we have compiled annotation data from all available N. vitripennis releases along with a wealth of transcriptomic data, methylation data and original analyses and annotations to form a comprehensive resource to aid the study of Nasonia. WaspAtlas allows users to explore gene structure and function, to compare expression data across sexes, tissues, developmental stages and conditions, and to explore published data relating to gene(s) of interest. WaspAtlas is easy to navigate and the database is easily searchable through the web interface. Detailed illustrations are provided for splice variants, protein domain predictions and the results of analyses. The website also functions as an analysis platform analysis for Nasonia, providing a set of tools designed to perform common analyses including GO term overrepresentation and RNAi off-target prediction. WaspAtlas will act as a hub for published data relating to Nasonia genes, and will be continually updated with new data to reflect the state of Nasonia-omics research. Database URL: http://waspatlas.com
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spelling pubmed-45994452015-10-14 WaspAtlas: a Nasonia vitripennis gene database and analysis platform Davies, Nathaniel J. Tauber, Eran Database (Oxford) Database Tool Nasonia vitripennis is a parasitoid wasp which is becoming an important model organism for parasitism, epigenetics, evolutionary and developmental genetics. WaspAtlas is a new gene database in which we have compiled annotation data from all available N. vitripennis releases along with a wealth of transcriptomic data, methylation data and original analyses and annotations to form a comprehensive resource to aid the study of Nasonia. WaspAtlas allows users to explore gene structure and function, to compare expression data across sexes, tissues, developmental stages and conditions, and to explore published data relating to gene(s) of interest. WaspAtlas is easy to navigate and the database is easily searchable through the web interface. Detailed illustrations are provided for splice variants, protein domain predictions and the results of analyses. The website also functions as an analysis platform analysis for Nasonia, providing a set of tools designed to perform common analyses including GO term overrepresentation and RNAi off-target prediction. WaspAtlas will act as a hub for published data relating to Nasonia genes, and will be continually updated with new data to reflect the state of Nasonia-omics research. Database URL: http://waspatlas.com Oxford University Press 2015-10-09 /pmc/articles/PMC4599445/ /pubmed/26452372 http://dx.doi.org/10.1093/database/bav103 Text en © The Author(s) 2015. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Database Tool
Davies, Nathaniel J.
Tauber, Eran
WaspAtlas: a Nasonia vitripennis gene database and analysis platform
title WaspAtlas: a Nasonia vitripennis gene database and analysis platform
title_full WaspAtlas: a Nasonia vitripennis gene database and analysis platform
title_fullStr WaspAtlas: a Nasonia vitripennis gene database and analysis platform
title_full_unstemmed WaspAtlas: a Nasonia vitripennis gene database and analysis platform
title_short WaspAtlas: a Nasonia vitripennis gene database and analysis platform
title_sort waspatlas: a nasonia vitripennis gene database and analysis platform
topic Database Tool
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4599445/
https://www.ncbi.nlm.nih.gov/pubmed/26452372
http://dx.doi.org/10.1093/database/bav103
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