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The complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon “Geoglobus ahangari” strain 234(T)

“Geoglobus ahangari” strain 234(T) is an obligate Fe(III)-reducing member of the Archaeoglobales, within the archaeal phylum Euryarchaeota, isolated from the Guaymas Basin hydrothermal system. It grows optimally at 88 °C by coupling the reduction of Fe(III) oxides to the oxidation of a wide range of...

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Autores principales: Manzella, Michael P., Holmes, Dawn E., Rocheleau, Jessica M., Chung, Amanda, Reguera, Gemma, Kashefi, Kazem
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4600277/
https://www.ncbi.nlm.nih.gov/pubmed/26457129
http://dx.doi.org/10.1186/s40793-015-0035-8
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author Manzella, Michael P.
Holmes, Dawn E.
Rocheleau, Jessica M.
Chung, Amanda
Reguera, Gemma
Kashefi, Kazem
author_facet Manzella, Michael P.
Holmes, Dawn E.
Rocheleau, Jessica M.
Chung, Amanda
Reguera, Gemma
Kashefi, Kazem
author_sort Manzella, Michael P.
collection PubMed
description “Geoglobus ahangari” strain 234(T) is an obligate Fe(III)-reducing member of the Archaeoglobales, within the archaeal phylum Euryarchaeota, isolated from the Guaymas Basin hydrothermal system. It grows optimally at 88 °C by coupling the reduction of Fe(III) oxides to the oxidation of a wide range of compounds, including long-chain fatty acids, and also grows autotrophically with hydrogen and Fe(III). It is the first archaeon reported to use a direct contact mechanism for Fe(III) oxide reduction, relying on a single archaellum for locomotion, numerous curled extracellular appendages for attachment, and outer-surface heme-containing proteins for electron transfer to the insoluble Fe(III) oxides. Here we describe the annotation of the genome of “G. ahangari” strain 234(T) and identify components critical to its versatility in electron donor utilization and obligate Fe(III) respiratory metabolism at high temperatures. The genome comprises a single, circular chromosome of 1,770,093 base pairs containing 2034 protein-coding genes and 52 RNA genes. In addition, emended descriptions of the genus “Geoglobus” and species “G. ahangari” are described. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0035-8) contains supplementary material, which is available to authorized users.
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spelling pubmed-46002772015-10-11 The complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon “Geoglobus ahangari” strain 234(T) Manzella, Michael P. Holmes, Dawn E. Rocheleau, Jessica M. Chung, Amanda Reguera, Gemma Kashefi, Kazem Stand Genomic Sci Extended Genome Report “Geoglobus ahangari” strain 234(T) is an obligate Fe(III)-reducing member of the Archaeoglobales, within the archaeal phylum Euryarchaeota, isolated from the Guaymas Basin hydrothermal system. It grows optimally at 88 °C by coupling the reduction of Fe(III) oxides to the oxidation of a wide range of compounds, including long-chain fatty acids, and also grows autotrophically with hydrogen and Fe(III). It is the first archaeon reported to use a direct contact mechanism for Fe(III) oxide reduction, relying on a single archaellum for locomotion, numerous curled extracellular appendages for attachment, and outer-surface heme-containing proteins for electron transfer to the insoluble Fe(III) oxides. Here we describe the annotation of the genome of “G. ahangari” strain 234(T) and identify components critical to its versatility in electron donor utilization and obligate Fe(III) respiratory metabolism at high temperatures. The genome comprises a single, circular chromosome of 1,770,093 base pairs containing 2034 protein-coding genes and 52 RNA genes. In addition, emended descriptions of the genus “Geoglobus” and species “G. ahangari” are described. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0035-8) contains supplementary material, which is available to authorized users. BioMed Central 2015-10-09 /pmc/articles/PMC4600277/ /pubmed/26457129 http://dx.doi.org/10.1186/s40793-015-0035-8 Text en © Manzella et al. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Extended Genome Report
Manzella, Michael P.
Holmes, Dawn E.
Rocheleau, Jessica M.
Chung, Amanda
Reguera, Gemma
Kashefi, Kazem
The complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon “Geoglobus ahangari” strain 234(T)
title The complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon “Geoglobus ahangari” strain 234(T)
title_full The complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon “Geoglobus ahangari” strain 234(T)
title_fullStr The complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon “Geoglobus ahangari” strain 234(T)
title_full_unstemmed The complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon “Geoglobus ahangari” strain 234(T)
title_short The complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon “Geoglobus ahangari” strain 234(T)
title_sort complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon “geoglobus ahangari” strain 234(t)
topic Extended Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4600277/
https://www.ncbi.nlm.nih.gov/pubmed/26457129
http://dx.doi.org/10.1186/s40793-015-0035-8
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