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A mouse informatics platform for phenotypic and translational discovery

The International Mouse Phenotyping Consortium (IMPC) is providing the world’s first functional catalogue of a mammalian genome by characterising a knockout mouse strain for every gene. A robust and highly structured informatics platform has been developed to systematically collate, analyse and diss...

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Autores principales: Ring, Natalie, Meehan, Terrence F., Blake, Andrew, Brown, James, Chen, Chao-Kung, Conte, Nathalie, Di Fenza, Armida, Fiegel, Tanja, Horner, Neil, Jacobsen, Julius O. B., Karp, Natasha, Lawson, Thomas, Mason, Jeremy C., Matthews, Peter, Morgan, Hugh, Relac, Mike, Santos, Luis, Smedley, Damian, Sneddon, Duncan, Pengelly, Alice, Tudose, Ilinca, Warren, Jonathan W. G., Westerberg, Henrik, Yaikhom, Gagarine, Parkinson, Helen, Mallon, Ann-Marie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4602054/
https://www.ncbi.nlm.nih.gov/pubmed/26314589
http://dx.doi.org/10.1007/s00335-015-9599-2
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author Ring, Natalie
Meehan, Terrence F.
Blake, Andrew
Brown, James
Chen, Chao-Kung
Conte, Nathalie
Di Fenza, Armida
Fiegel, Tanja
Horner, Neil
Jacobsen, Julius O. B.
Karp, Natasha
Lawson, Thomas
Mason, Jeremy C.
Matthews, Peter
Morgan, Hugh
Relac, Mike
Santos, Luis
Smedley, Damian
Sneddon, Duncan
Pengelly, Alice
Tudose, Ilinca
Warren, Jonathan W. G.
Westerberg, Henrik
Yaikhom, Gagarine
Parkinson, Helen
Mallon, Ann-Marie
author_facet Ring, Natalie
Meehan, Terrence F.
Blake, Andrew
Brown, James
Chen, Chao-Kung
Conte, Nathalie
Di Fenza, Armida
Fiegel, Tanja
Horner, Neil
Jacobsen, Julius O. B.
Karp, Natasha
Lawson, Thomas
Mason, Jeremy C.
Matthews, Peter
Morgan, Hugh
Relac, Mike
Santos, Luis
Smedley, Damian
Sneddon, Duncan
Pengelly, Alice
Tudose, Ilinca
Warren, Jonathan W. G.
Westerberg, Henrik
Yaikhom, Gagarine
Parkinson, Helen
Mallon, Ann-Marie
author_sort Ring, Natalie
collection PubMed
description The International Mouse Phenotyping Consortium (IMPC) is providing the world’s first functional catalogue of a mammalian genome by characterising a knockout mouse strain for every gene. A robust and highly structured informatics platform has been developed to systematically collate, analyse and disseminate the data produced by the IMPC. As the first phase of the project, in which 5000 new knockout strains are being broadly phenotyped, nears completion, the informatics platform is extending and adapting to support the increasing volume and complexity of the data produced as well as addressing a large volume of users and emerging user groups. An intuitive interface helps researchers explore IMPC data by giving overviews and the ability to find and visualise data that support a phenotype assertion. Dedicated disease pages allow researchers to find new mouse models of human diseases, and novel viewers provide high-resolution images of embryonic and adult dysmorphologies. With each monthly release, the informatics platform will continue to evolve to support the increased data volume and to maintain its position as the primary route of access to IMPC data and as an invaluable resource for clinical and non-clinical researchers.
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spelling pubmed-46020542015-10-16 A mouse informatics platform for phenotypic and translational discovery Ring, Natalie Meehan, Terrence F. Blake, Andrew Brown, James Chen, Chao-Kung Conte, Nathalie Di Fenza, Armida Fiegel, Tanja Horner, Neil Jacobsen, Julius O. B. Karp, Natasha Lawson, Thomas Mason, Jeremy C. Matthews, Peter Morgan, Hugh Relac, Mike Santos, Luis Smedley, Damian Sneddon, Duncan Pengelly, Alice Tudose, Ilinca Warren, Jonathan W. G. Westerberg, Henrik Yaikhom, Gagarine Parkinson, Helen Mallon, Ann-Marie Mamm Genome Article The International Mouse Phenotyping Consortium (IMPC) is providing the world’s first functional catalogue of a mammalian genome by characterising a knockout mouse strain for every gene. A robust and highly structured informatics platform has been developed to systematically collate, analyse and disseminate the data produced by the IMPC. As the first phase of the project, in which 5000 new knockout strains are being broadly phenotyped, nears completion, the informatics platform is extending and adapting to support the increasing volume and complexity of the data produced as well as addressing a large volume of users and emerging user groups. An intuitive interface helps researchers explore IMPC data by giving overviews and the ability to find and visualise data that support a phenotype assertion. Dedicated disease pages allow researchers to find new mouse models of human diseases, and novel viewers provide high-resolution images of embryonic and adult dysmorphologies. With each monthly release, the informatics platform will continue to evolve to support the increased data volume and to maintain its position as the primary route of access to IMPC data and as an invaluable resource for clinical and non-clinical researchers. Springer US 2015-08-28 2015 /pmc/articles/PMC4602054/ /pubmed/26314589 http://dx.doi.org/10.1007/s00335-015-9599-2 Text en © The Author(s) 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Article
Ring, Natalie
Meehan, Terrence F.
Blake, Andrew
Brown, James
Chen, Chao-Kung
Conte, Nathalie
Di Fenza, Armida
Fiegel, Tanja
Horner, Neil
Jacobsen, Julius O. B.
Karp, Natasha
Lawson, Thomas
Mason, Jeremy C.
Matthews, Peter
Morgan, Hugh
Relac, Mike
Santos, Luis
Smedley, Damian
Sneddon, Duncan
Pengelly, Alice
Tudose, Ilinca
Warren, Jonathan W. G.
Westerberg, Henrik
Yaikhom, Gagarine
Parkinson, Helen
Mallon, Ann-Marie
A mouse informatics platform for phenotypic and translational discovery
title A mouse informatics platform for phenotypic and translational discovery
title_full A mouse informatics platform for phenotypic and translational discovery
title_fullStr A mouse informatics platform for phenotypic and translational discovery
title_full_unstemmed A mouse informatics platform for phenotypic and translational discovery
title_short A mouse informatics platform for phenotypic and translational discovery
title_sort mouse informatics platform for phenotypic and translational discovery
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4602054/
https://www.ncbi.nlm.nih.gov/pubmed/26314589
http://dx.doi.org/10.1007/s00335-015-9599-2
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