Cargando…
A mouse informatics platform for phenotypic and translational discovery
The International Mouse Phenotyping Consortium (IMPC) is providing the world’s first functional catalogue of a mammalian genome by characterising a knockout mouse strain for every gene. A robust and highly structured informatics platform has been developed to systematically collate, analyse and diss...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4602054/ https://www.ncbi.nlm.nih.gov/pubmed/26314589 http://dx.doi.org/10.1007/s00335-015-9599-2 |
_version_ | 1782394640700276736 |
---|---|
author | Ring, Natalie Meehan, Terrence F. Blake, Andrew Brown, James Chen, Chao-Kung Conte, Nathalie Di Fenza, Armida Fiegel, Tanja Horner, Neil Jacobsen, Julius O. B. Karp, Natasha Lawson, Thomas Mason, Jeremy C. Matthews, Peter Morgan, Hugh Relac, Mike Santos, Luis Smedley, Damian Sneddon, Duncan Pengelly, Alice Tudose, Ilinca Warren, Jonathan W. G. Westerberg, Henrik Yaikhom, Gagarine Parkinson, Helen Mallon, Ann-Marie |
author_facet | Ring, Natalie Meehan, Terrence F. Blake, Andrew Brown, James Chen, Chao-Kung Conte, Nathalie Di Fenza, Armida Fiegel, Tanja Horner, Neil Jacobsen, Julius O. B. Karp, Natasha Lawson, Thomas Mason, Jeremy C. Matthews, Peter Morgan, Hugh Relac, Mike Santos, Luis Smedley, Damian Sneddon, Duncan Pengelly, Alice Tudose, Ilinca Warren, Jonathan W. G. Westerberg, Henrik Yaikhom, Gagarine Parkinson, Helen Mallon, Ann-Marie |
author_sort | Ring, Natalie |
collection | PubMed |
description | The International Mouse Phenotyping Consortium (IMPC) is providing the world’s first functional catalogue of a mammalian genome by characterising a knockout mouse strain for every gene. A robust and highly structured informatics platform has been developed to systematically collate, analyse and disseminate the data produced by the IMPC. As the first phase of the project, in which 5000 new knockout strains are being broadly phenotyped, nears completion, the informatics platform is extending and adapting to support the increasing volume and complexity of the data produced as well as addressing a large volume of users and emerging user groups. An intuitive interface helps researchers explore IMPC data by giving overviews and the ability to find and visualise data that support a phenotype assertion. Dedicated disease pages allow researchers to find new mouse models of human diseases, and novel viewers provide high-resolution images of embryonic and adult dysmorphologies. With each monthly release, the informatics platform will continue to evolve to support the increased data volume and to maintain its position as the primary route of access to IMPC data and as an invaluable resource for clinical and non-clinical researchers. |
format | Online Article Text |
id | pubmed-4602054 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-46020542015-10-16 A mouse informatics platform for phenotypic and translational discovery Ring, Natalie Meehan, Terrence F. Blake, Andrew Brown, James Chen, Chao-Kung Conte, Nathalie Di Fenza, Armida Fiegel, Tanja Horner, Neil Jacobsen, Julius O. B. Karp, Natasha Lawson, Thomas Mason, Jeremy C. Matthews, Peter Morgan, Hugh Relac, Mike Santos, Luis Smedley, Damian Sneddon, Duncan Pengelly, Alice Tudose, Ilinca Warren, Jonathan W. G. Westerberg, Henrik Yaikhom, Gagarine Parkinson, Helen Mallon, Ann-Marie Mamm Genome Article The International Mouse Phenotyping Consortium (IMPC) is providing the world’s first functional catalogue of a mammalian genome by characterising a knockout mouse strain for every gene. A robust and highly structured informatics platform has been developed to systematically collate, analyse and disseminate the data produced by the IMPC. As the first phase of the project, in which 5000 new knockout strains are being broadly phenotyped, nears completion, the informatics platform is extending and adapting to support the increasing volume and complexity of the data produced as well as addressing a large volume of users and emerging user groups. An intuitive interface helps researchers explore IMPC data by giving overviews and the ability to find and visualise data that support a phenotype assertion. Dedicated disease pages allow researchers to find new mouse models of human diseases, and novel viewers provide high-resolution images of embryonic and adult dysmorphologies. With each monthly release, the informatics platform will continue to evolve to support the increased data volume and to maintain its position as the primary route of access to IMPC data and as an invaluable resource for clinical and non-clinical researchers. Springer US 2015-08-28 2015 /pmc/articles/PMC4602054/ /pubmed/26314589 http://dx.doi.org/10.1007/s00335-015-9599-2 Text en © The Author(s) 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Article Ring, Natalie Meehan, Terrence F. Blake, Andrew Brown, James Chen, Chao-Kung Conte, Nathalie Di Fenza, Armida Fiegel, Tanja Horner, Neil Jacobsen, Julius O. B. Karp, Natasha Lawson, Thomas Mason, Jeremy C. Matthews, Peter Morgan, Hugh Relac, Mike Santos, Luis Smedley, Damian Sneddon, Duncan Pengelly, Alice Tudose, Ilinca Warren, Jonathan W. G. Westerberg, Henrik Yaikhom, Gagarine Parkinson, Helen Mallon, Ann-Marie A mouse informatics platform for phenotypic and translational discovery |
title | A mouse informatics platform for phenotypic and translational discovery |
title_full | A mouse informatics platform for phenotypic and translational discovery |
title_fullStr | A mouse informatics platform for phenotypic and translational discovery |
title_full_unstemmed | A mouse informatics platform for phenotypic and translational discovery |
title_short | A mouse informatics platform for phenotypic and translational discovery |
title_sort | mouse informatics platform for phenotypic and translational discovery |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4602054/ https://www.ncbi.nlm.nih.gov/pubmed/26314589 http://dx.doi.org/10.1007/s00335-015-9599-2 |
work_keys_str_mv | AT ringnatalie amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT meehanterrencef amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT blakeandrew amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT brownjames amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT chenchaokung amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT contenathalie amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT difenzaarmida amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT fiegeltanja amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT hornerneil amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT jacobsenjuliusob amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT karpnatasha amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT lawsonthomas amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT masonjeremyc amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT matthewspeter amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT morganhugh amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT relacmike amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT santosluis amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT smedleydamian amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT sneddonduncan amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT pengellyalice amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT tudoseilinca amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT warrenjonathanwg amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT westerberghenrik amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT yaikhomgagarine amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT parkinsonhelen amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT mallonannmarie amouseinformaticsplatformforphenotypicandtranslationaldiscovery AT ringnatalie mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT meehanterrencef mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT blakeandrew mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT brownjames mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT chenchaokung mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT contenathalie mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT difenzaarmida mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT fiegeltanja mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT hornerneil mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT jacobsenjuliusob mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT karpnatasha mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT lawsonthomas mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT masonjeremyc mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT matthewspeter mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT morganhugh mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT relacmike mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT santosluis mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT smedleydamian mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT sneddonduncan mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT pengellyalice mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT tudoseilinca mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT warrenjonathanwg mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT westerberghenrik mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT yaikhomgagarine mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT parkinsonhelen mouseinformaticsplatformforphenotypicandtranslationaldiscovery AT mallonannmarie mouseinformaticsplatformforphenotypicandtranslationaldiscovery |