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Publishing and sharing multi-dimensional image data with OMERO

Imaging data are used in the life and biomedical sciences to measure the molecular and structural composition and dynamics of cells, tissues, and organisms. Datasets range in size from megabytes to terabytes and usually contain a combination of binary pixel data and metadata that describe the acquis...

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Autores principales: Burel, Jean-Marie, Besson, Sébastien, Blackburn, Colin, Carroll, Mark, Ferguson, Richard K., Flynn, Helen, Gillen, Kenneth, Leigh, Roger, Li, Simon, Lindner, Dominik, Linkert, Melissa, Moore, William J., Ramalingam, Balaji, Rozbicki, Emil, Tarkowska, Aleksandra, Walczysko, Petr, Allan, Chris, Moore, Josh, Swedlow, Jason R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4602067/
https://www.ncbi.nlm.nih.gov/pubmed/26223880
http://dx.doi.org/10.1007/s00335-015-9587-6
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author Burel, Jean-Marie
Besson, Sébastien
Blackburn, Colin
Carroll, Mark
Ferguson, Richard K.
Flynn, Helen
Gillen, Kenneth
Leigh, Roger
Li, Simon
Lindner, Dominik
Linkert, Melissa
Moore, William J.
Ramalingam, Balaji
Rozbicki, Emil
Tarkowska, Aleksandra
Walczysko, Petr
Allan, Chris
Moore, Josh
Swedlow, Jason R.
author_facet Burel, Jean-Marie
Besson, Sébastien
Blackburn, Colin
Carroll, Mark
Ferguson, Richard K.
Flynn, Helen
Gillen, Kenneth
Leigh, Roger
Li, Simon
Lindner, Dominik
Linkert, Melissa
Moore, William J.
Ramalingam, Balaji
Rozbicki, Emil
Tarkowska, Aleksandra
Walczysko, Petr
Allan, Chris
Moore, Josh
Swedlow, Jason R.
author_sort Burel, Jean-Marie
collection PubMed
description Imaging data are used in the life and biomedical sciences to measure the molecular and structural composition and dynamics of cells, tissues, and organisms. Datasets range in size from megabytes to terabytes and usually contain a combination of binary pixel data and metadata that describe the acquisition process and any derived results. The OMERO image data management platform allows users to securely share image datasets according to specific permissions levels: data can be held privately, shared with a set of colleagues, or made available via a public URL. Users control access by assigning data to specific Groups with defined membership and access rights. OMERO’s Permission system supports simple data sharing in a lab, collaborative data analysis, and even teaching environments. OMERO software is open source and released by the OME Consortium at www.openmicroscopy.org.
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spelling pubmed-46020672015-10-16 Publishing and sharing multi-dimensional image data with OMERO Burel, Jean-Marie Besson, Sébastien Blackburn, Colin Carroll, Mark Ferguson, Richard K. Flynn, Helen Gillen, Kenneth Leigh, Roger Li, Simon Lindner, Dominik Linkert, Melissa Moore, William J. Ramalingam, Balaji Rozbicki, Emil Tarkowska, Aleksandra Walczysko, Petr Allan, Chris Moore, Josh Swedlow, Jason R. Mamm Genome Article Imaging data are used in the life and biomedical sciences to measure the molecular and structural composition and dynamics of cells, tissues, and organisms. Datasets range in size from megabytes to terabytes and usually contain a combination of binary pixel data and metadata that describe the acquisition process and any derived results. The OMERO image data management platform allows users to securely share image datasets according to specific permissions levels: data can be held privately, shared with a set of colleagues, or made available via a public URL. Users control access by assigning data to specific Groups with defined membership and access rights. OMERO’s Permission system supports simple data sharing in a lab, collaborative data analysis, and even teaching environments. OMERO software is open source and released by the OME Consortium at www.openmicroscopy.org. Springer US 2015-07-30 2015 /pmc/articles/PMC4602067/ /pubmed/26223880 http://dx.doi.org/10.1007/s00335-015-9587-6 Text en © The Author(s) 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Article
Burel, Jean-Marie
Besson, Sébastien
Blackburn, Colin
Carroll, Mark
Ferguson, Richard K.
Flynn, Helen
Gillen, Kenneth
Leigh, Roger
Li, Simon
Lindner, Dominik
Linkert, Melissa
Moore, William J.
Ramalingam, Balaji
Rozbicki, Emil
Tarkowska, Aleksandra
Walczysko, Petr
Allan, Chris
Moore, Josh
Swedlow, Jason R.
Publishing and sharing multi-dimensional image data with OMERO
title Publishing and sharing multi-dimensional image data with OMERO
title_full Publishing and sharing multi-dimensional image data with OMERO
title_fullStr Publishing and sharing multi-dimensional image data with OMERO
title_full_unstemmed Publishing and sharing multi-dimensional image data with OMERO
title_short Publishing and sharing multi-dimensional image data with OMERO
title_sort publishing and sharing multi-dimensional image data with omero
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4602067/
https://www.ncbi.nlm.nih.gov/pubmed/26223880
http://dx.doi.org/10.1007/s00335-015-9587-6
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