Cargando…

Towards a Supertree of Arthropoda: A Species-Level Supertree of the Spiny, Slipper and Coral Lobsters (Decapoda: Achelata)

While supertrees have been built for many vertebrate groups (notably birds, mammals and dinosaurs), invertebrates have attracted relatively little attention. The paucity of supertrees of arthropods is particularly surprising given their economic and ecological importance, as well as their overwhelmi...

Descripción completa

Detalles Bibliográficos
Autores principales: Davis, Katie E., Hesketh, Thomas W., Delmer, Cyrille, Wills, Matthew A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4603899/
https://www.ncbi.nlm.nih.gov/pubmed/26461106
http://dx.doi.org/10.1371/journal.pone.0140110
_version_ 1782394976729038848
author Davis, Katie E.
Hesketh, Thomas W.
Delmer, Cyrille
Wills, Matthew A.
author_facet Davis, Katie E.
Hesketh, Thomas W.
Delmer, Cyrille
Wills, Matthew A.
author_sort Davis, Katie E.
collection PubMed
description While supertrees have been built for many vertebrate groups (notably birds, mammals and dinosaurs), invertebrates have attracted relatively little attention. The paucity of supertrees of arthropods is particularly surprising given their economic and ecological importance, as well as their overwhelming contribution to biodiversity. The absence of comprehensive archives of machine-readable source trees, coupled with the need for software implementing repeatable protocols for managing them, has undoubtedly impeded progress. Here we present a supertree of Achelata (spiny, slipper and coral lobsters) as a proof of concept, constructed using new supertree specific software (the Supertree Toolkit; STK) and following a published protocol. We also introduce a new resource for archiving and managing published source trees. Our supertree of Achelata is synthesised from morphological and molecular source trees, and represents the most complete species-level tree of the group to date. Our findings are consistent with recent taxonomic treatments, confirming the validity of just two families: Palinuridae and Scyllaridae; Synaxidae were resolved within Palinuridae. Monophyletic Silentes and Stridentes lineages are recovered within Palinuridae, and all sub-families within Scyllaridae are found to be monophyletic with the exception of Ibacinae. We demonstrate the feasibility of building larger supertrees of arthropods, with the ultimate objective of building a complete species-level phylogeny for the entire phylum using a divide and conquer strategy.
format Online
Article
Text
id pubmed-4603899
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-46038992015-10-20 Towards a Supertree of Arthropoda: A Species-Level Supertree of the Spiny, Slipper and Coral Lobsters (Decapoda: Achelata) Davis, Katie E. Hesketh, Thomas W. Delmer, Cyrille Wills, Matthew A. PLoS One Research Article While supertrees have been built for many vertebrate groups (notably birds, mammals and dinosaurs), invertebrates have attracted relatively little attention. The paucity of supertrees of arthropods is particularly surprising given their economic and ecological importance, as well as their overwhelming contribution to biodiversity. The absence of comprehensive archives of machine-readable source trees, coupled with the need for software implementing repeatable protocols for managing them, has undoubtedly impeded progress. Here we present a supertree of Achelata (spiny, slipper and coral lobsters) as a proof of concept, constructed using new supertree specific software (the Supertree Toolkit; STK) and following a published protocol. We also introduce a new resource for archiving and managing published source trees. Our supertree of Achelata is synthesised from morphological and molecular source trees, and represents the most complete species-level tree of the group to date. Our findings are consistent with recent taxonomic treatments, confirming the validity of just two families: Palinuridae and Scyllaridae; Synaxidae were resolved within Palinuridae. Monophyletic Silentes and Stridentes lineages are recovered within Palinuridae, and all sub-families within Scyllaridae are found to be monophyletic with the exception of Ibacinae. We demonstrate the feasibility of building larger supertrees of arthropods, with the ultimate objective of building a complete species-level phylogeny for the entire phylum using a divide and conquer strategy. Public Library of Science 2015-10-13 /pmc/articles/PMC4603899/ /pubmed/26461106 http://dx.doi.org/10.1371/journal.pone.0140110 Text en © 2015 Davis et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Davis, Katie E.
Hesketh, Thomas W.
Delmer, Cyrille
Wills, Matthew A.
Towards a Supertree of Arthropoda: A Species-Level Supertree of the Spiny, Slipper and Coral Lobsters (Decapoda: Achelata)
title Towards a Supertree of Arthropoda: A Species-Level Supertree of the Spiny, Slipper and Coral Lobsters (Decapoda: Achelata)
title_full Towards a Supertree of Arthropoda: A Species-Level Supertree of the Spiny, Slipper and Coral Lobsters (Decapoda: Achelata)
title_fullStr Towards a Supertree of Arthropoda: A Species-Level Supertree of the Spiny, Slipper and Coral Lobsters (Decapoda: Achelata)
title_full_unstemmed Towards a Supertree of Arthropoda: A Species-Level Supertree of the Spiny, Slipper and Coral Lobsters (Decapoda: Achelata)
title_short Towards a Supertree of Arthropoda: A Species-Level Supertree of the Spiny, Slipper and Coral Lobsters (Decapoda: Achelata)
title_sort towards a supertree of arthropoda: a species-level supertree of the spiny, slipper and coral lobsters (decapoda: achelata)
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4603899/
https://www.ncbi.nlm.nih.gov/pubmed/26461106
http://dx.doi.org/10.1371/journal.pone.0140110
work_keys_str_mv AT daviskatiee towardsasupertreeofarthropodaaspecieslevelsupertreeofthespinyslipperandcorallobstersdecapodaachelata
AT heskeththomasw towardsasupertreeofarthropodaaspecieslevelsupertreeofthespinyslipperandcorallobstersdecapodaachelata
AT delmercyrille towardsasupertreeofarthropodaaspecieslevelsupertreeofthespinyslipperandcorallobstersdecapodaachelata
AT willsmatthewa towardsasupertreeofarthropodaaspecieslevelsupertreeofthespinyslipperandcorallobstersdecapodaachelata