Cargando…

cnvCurator: an interactive visualization and editing tool for somatic copy number variations

BACKGROUND: One of the most important somatic aberrations, copy number variations (CNVs) in tumor genomes is believed to have a high probability of harboring oncotargets. Detection of somatic CNVs is an essential part of cancer genome sequencing analysis, but the accuracy is usually limited due to v...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ma, Lingnan, Qin, Maochun, Liu, Biao, Hu, Qiang, Wei, Lei, Wang, Jianmin, Liu, Song
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4608136/ https://www.ncbi.nlm.nih.gov/pubmed/26472134 http://dx.doi.org/10.1186/s12859-015-0766-y

Ejemplares similares

SCNVSim: somatic copy number variation and structure variation simulator
por: Qin, Maochun, et al.
Publicado: (2015)

X-CNV: genome-wide prediction of the pathogenicity of copy number variations
por: Zhang, Li, et al.
Publicado: (2021)

SubPatCNV: approximate subspace pattern mining for mapping copy-number variations
por: Johnson, Nicholas, et al.
Publicado: (2015)

CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics
por: Gai, Xiaowu, et al.
Publicado: (2010)

inCNV: An Integrated Analysis Tool for Copy Number Variation on Whole Exome Sequencing
por: Chanwigoon, Saowwapark, et al.
Publicado: (2020)

MetaCNV - a consensus approach to infer accurate copy numbers from low coverage data
por: Friedrich, Stefanie, et al.
Publicado: (2020)

isoCNV: in silico optimization of copy number variant detection from targeted or exome sequencing data
por: Barcelona-Cabeza, Rosa, et al.
Publicado: (2021)

Anaconda: AN automated pipeline for somatic COpy Number variation Detection and Annotation from tumor exome sequencing data
por: Gao, Jianing, et al.
Publicado: (2017)

HandyCNV: Standardized Summary, Annotation, Comparison, and Visualization of Copy Number Variant, Copy Number Variation Region, and Runs of Homozygosity
por: Zhou, Jinghang, et al.
Publicado: (2021)

Y(MAP): a pipeline for visualization of copy number variation and loss of heterozygosity in eukaryotic pathogens
por: Abbey, Darren A, et al.
Publicado: (2014)

CNV-WebStore: Online CNV Analysis, Storage and Interpretation
por: Vandeweyer, Geert, et al.
Publicado: (2011)

CNV Radar: an improved method for somatic copy number alteration characterization in oncology
por: Soong, David, et al.
Publicado: (2020)

The Role of Number of Copies, Structure, Behavior and Copy Number Variations (CNV) of the Y Chromosome in Male Infertility
por: Signore, Fabrizio, et al.
Publicado: (2019)

Copy Number Variation (CNV): A New Genomic Insight in Horses
por: Laseca, Nora, et al.
Publicado: (2022)

Evaluation of copy number variation detection for a SNP array platform
por: Zhang, Xin, et al.
Publicado: (2014)

MONTAGE: a new tool for high-throughput detection of mosaic copy number variation
por: Glessner, Joseph T., et al.
Publicado: (2021)

CONAN: copy number variation analysis software for genome-wide association studies
por: Forer, Lukas, et al.
Publicado: (2010)

Genome-wide copy number variation (CNV) in patients with autoimmune Addison's disease
por: Brønstad, Ingeborg, et al.
Publicado: (2011)

ParseCNV integrative copy number variation association software with quality tracking
por: Glessner, Joseph T., et al.
Publicado: (2013)

Copy number variation (CNV) identification, interpretation, and database from Brazilian patients
por: de Godoy, Victória Cabral Silveira Monteiro, et al.
Publicado: (2020)

dbCNV: deleteriousness-based model to predict pathogenicity of copy number variations
por: Lv, Kangqi, et al.
Publicado: (2023)

A novel scatterplot-based method to detect copy number variation (CNV)
por: Qiao, Jia-Lu, et al.
Publicado: (2023)

SNPExpress: integrated visualization of genome-wide genotypes, copy numbers and gene expression levels
por: Sanders, Mathijs A, et al.
Publicado: (2008)

GenomeCAT: a versatile tool for the analysis and integrative visualization of DNA copy number variants
por: Tebel, Katrin, et al.
Publicado: (2017)

CoNVaQ: a web tool for copy number variation-based association studies
por: Larsen, Simon Jonas, et al.
Publicado: (2018)

Detecting copy number variation in next generation sequencing data from diagnostic gene panels
por: Singh, Ashish Kumar, et al.
Publicado: (2021)

Partitioning of copy-number genotypes in pedigrees
por: Perreault, Louis-Philippe Lemieux, et al.
Publicado: (2010)

CNVassoc: Association analysis of CNV data using R
por: Subirana, Isaac, et al.
Publicado: (2011)

MSeq-CNV: accurate detection of Copy Number Variation from Sequencing of Multiple samples
por: Malekpour, Seyed Amir, et al.
Publicado: (2018)

Hecaton: reliably detecting copy number variation in plant genomes using short read sequencing data
por: Wijfjes, Raúl Y., et al.
Publicado: (2019)

Computational methods for detecting copy number variations in cancer genome using next generation sequencing: principles and challenges
por: Liu, Biao, et al.
Publicado: (2013)

Technical considerations for genotyping multi-allelic copy number variation (CNV), in regions of segmental duplication
por: Cantsilieris, Stuart, et al.
Publicado: (2014)

cnvCapSeq: detecting copy number variation in long-range targeted resequencing data
por: Bellos, Evangelos, et al.
Publicado: (2014)

Association Analysis to Copy Number Variation (CNV) of Opn4 Gene with Growth Traits of Goats
por: Li, LiJuan, et al.
Publicado: (2020)

CNV-P: a machine-learning framework for predicting high confident copy number variations
por: Wang, Taifu, et al.
Publicado: (2021)

RNAseqCNV: analysis of large-scale copy number variations from RNA-seq data
por: Bařinka, Jan, et al.
Publicado: (2022)

CNV-CH: A Convex Hull Based Segmentation Approach to Detect Copy Number Variations (CNV) Using Next-Generation Sequencing Data
por: Sinha, Rituparna, et al.
Publicado: (2015)

ConanVarvar: a versatile tool for the detection of large syndromic copy number variation from whole-genome sequencing data
por: Gudkov, Mikhail, et al.
Publicado: (2023)

Segmentum: a tool for copy number analysis of cancer genomes
por: Afyounian, Ebrahim, et al.
Publicado: (2017)

CNVScope: Visually Exploring Copy Number Aberrations in Cancer Genomes
por: Dalgleish, James LT, et al.
Publicado: (2019)

Cannot write session to /tmp/vufind_sessions/sess_o9nk08jaob6duaos322j6k6668