High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176

Burkholderia sp. strain WSM4176 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N(2)-fixing root nodule of Lebeckia ambigua collected in Nieuwoudtville, Western Cape of South Africa, in October 2007. This plant persists in infertile, acidic and deep sa...

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Autores principales: De Meyer, Sofie E., Tian, Rui, Seshadri, Rekha, Reddy, TBK, Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Kyrpides, Nikos, Yates, Ron, Howieson, John, Reeve, Wayne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4609093/
https://www.ncbi.nlm.nih.gov/pubmed/26478785
http://dx.doi.org/10.1186/s40793-015-0072-3
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author De Meyer, Sofie E.
Tian, Rui
Seshadri, Rekha
Reddy, TBK
Markowitz, Victor
Ivanova, Natalia
Pati, Amrita
Woyke, Tanja
Kyrpides, Nikos
Yates, Ron
Howieson, John
Reeve, Wayne
author_facet De Meyer, Sofie E.
Tian, Rui
Seshadri, Rekha
Reddy, TBK
Markowitz, Victor
Ivanova, Natalia
Pati, Amrita
Woyke, Tanja
Kyrpides, Nikos
Yates, Ron
Howieson, John
Reeve, Wayne
author_sort De Meyer, Sofie E.
collection PubMed
description Burkholderia sp. strain WSM4176 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N(2)-fixing root nodule of Lebeckia ambigua collected in Nieuwoudtville, Western Cape of South Africa, in October 2007. This plant persists in infertile, acidic and deep sandy soils, and is therefore an ideal candidate for a perennial based agriculture system in Western Australia. Here we describe the features of Burkholderia sp. strain WSM4176, which represents a potential inoculant quality strain for L. ambigua, together with sequence and annotation. The 9,065,247 bp high-quality-draft genome is arranged in 13 scaffolds of 65 contigs, contains 8369 protein-coding genes and 128 RNA-only encoding genes, and is part of the GEBA-RNB project proposal (Project ID 882).
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spelling pubmed-46090932015-10-18 High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176 De Meyer, Sofie E. Tian, Rui Seshadri, Rekha Reddy, TBK Markowitz, Victor Ivanova, Natalia Pati, Amrita Woyke, Tanja Kyrpides, Nikos Yates, Ron Howieson, John Reeve, Wayne Stand Genomic Sci Short Genome Report Burkholderia sp. strain WSM4176 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N(2)-fixing root nodule of Lebeckia ambigua collected in Nieuwoudtville, Western Cape of South Africa, in October 2007. This plant persists in infertile, acidic and deep sandy soils, and is therefore an ideal candidate for a perennial based agriculture system in Western Australia. Here we describe the features of Burkholderia sp. strain WSM4176, which represents a potential inoculant quality strain for L. ambigua, together with sequence and annotation. The 9,065,247 bp high-quality-draft genome is arranged in 13 scaffolds of 65 contigs, contains 8369 protein-coding genes and 128 RNA-only encoding genes, and is part of the GEBA-RNB project proposal (Project ID 882). BioMed Central 2015-10-16 /pmc/articles/PMC4609093/ /pubmed/26478785 http://dx.doi.org/10.1186/s40793-015-0072-3 Text en © De Meyer et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
De Meyer, Sofie E.
Tian, Rui
Seshadri, Rekha
Reddy, TBK
Markowitz, Victor
Ivanova, Natalia
Pati, Amrita
Woyke, Tanja
Kyrpides, Nikos
Yates, Ron
Howieson, John
Reeve, Wayne
High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176
title High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176
title_full High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176
title_fullStr High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176
title_full_unstemmed High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176
title_short High-quality permanent draft genome sequence of the Lebeckia ambigua-nodulating Burkholderia sp. strain WSM4176
title_sort high-quality permanent draft genome sequence of the lebeckia ambigua-nodulating burkholderia sp. strain wsm4176
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4609093/
https://www.ncbi.nlm.nih.gov/pubmed/26478785
http://dx.doi.org/10.1186/s40793-015-0072-3
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