Cargando…

Isolation of nuclear microsatellites in the African timber tree Lophira alata (Ochnaceae) and cross-amplification in L. lanceolata(1)

PREMISE OF THE STUDY: Microsatellite markers were isolated in the rainforest tree Lophira alata (Ochnaceae), an important timber tree from Central Africa, and cross-amplified on its savannah counterpart, L. lanceolata. METHODS AND RESULTS: From a microsatellite-enriched library sequenced on a 454 GS...

Descripción completa

Detalles Bibliográficos
Autores principales: Piñeiro, Rosalía, Staquet, Adrien, Hardy, Olivier J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4610311/
https://www.ncbi.nlm.nih.gov/pubmed/26504680
http://dx.doi.org/10.3732/apps.1500056
_version_ 1782395924091240448
author Piñeiro, Rosalía
Staquet, Adrien
Hardy, Olivier J.
author_facet Piñeiro, Rosalía
Staquet, Adrien
Hardy, Olivier J.
author_sort Piñeiro, Rosalía
collection PubMed
description PREMISE OF THE STUDY: Microsatellite markers were isolated in the rainforest tree Lophira alata (Ochnaceae), an important timber tree from Central Africa, and cross-amplified on its savannah counterpart, L. lanceolata. METHODS AND RESULTS: From a microsatellite-enriched library sequenced on a 454 GS FLX platform, 13 primer combinations were identified. Amplification was optimized in two multiplex reactions. The primers amplified di- and trinucelotide repeats, with two to seven alleles per locus. Eleven primers also amplified in L. lanceolata. CONCLUSIONS: Microsatellite primers developed for the genus Lophira displayed sufficient variation to investigate hybridization between congeneric species in the rainforest–savannah transition.
format Online
Article
Text
id pubmed-4610311
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Botanical Society of America
record_format MEDLINE/PubMed
spelling pubmed-46103112015-10-26 Isolation of nuclear microsatellites in the African timber tree Lophira alata (Ochnaceae) and cross-amplification in L. lanceolata(1) Piñeiro, Rosalía Staquet, Adrien Hardy, Olivier J. Appl Plant Sci Primer Note PREMISE OF THE STUDY: Microsatellite markers were isolated in the rainforest tree Lophira alata (Ochnaceae), an important timber tree from Central Africa, and cross-amplified on its savannah counterpart, L. lanceolata. METHODS AND RESULTS: From a microsatellite-enriched library sequenced on a 454 GS FLX platform, 13 primer combinations were identified. Amplification was optimized in two multiplex reactions. The primers amplified di- and trinucelotide repeats, with two to seven alleles per locus. Eleven primers also amplified in L. lanceolata. CONCLUSIONS: Microsatellite primers developed for the genus Lophira displayed sufficient variation to investigate hybridization between congeneric species in the rainforest–savannah transition. Botanical Society of America 2015-10-14 /pmc/articles/PMC4610311/ /pubmed/26504680 http://dx.doi.org/10.3732/apps.1500056 Text en © 2015 Piñeiro et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Piñeiro, Rosalía
Staquet, Adrien
Hardy, Olivier J.
Isolation of nuclear microsatellites in the African timber tree Lophira alata (Ochnaceae) and cross-amplification in L. lanceolata(1)
title Isolation of nuclear microsatellites in the African timber tree Lophira alata (Ochnaceae) and cross-amplification in L. lanceolata(1)
title_full Isolation of nuclear microsatellites in the African timber tree Lophira alata (Ochnaceae) and cross-amplification in L. lanceolata(1)
title_fullStr Isolation of nuclear microsatellites in the African timber tree Lophira alata (Ochnaceae) and cross-amplification in L. lanceolata(1)
title_full_unstemmed Isolation of nuclear microsatellites in the African timber tree Lophira alata (Ochnaceae) and cross-amplification in L. lanceolata(1)
title_short Isolation of nuclear microsatellites in the African timber tree Lophira alata (Ochnaceae) and cross-amplification in L. lanceolata(1)
title_sort isolation of nuclear microsatellites in the african timber tree lophira alata (ochnaceae) and cross-amplification in l. lanceolata(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4610311/
https://www.ncbi.nlm.nih.gov/pubmed/26504680
http://dx.doi.org/10.3732/apps.1500056
work_keys_str_mv AT pineirorosalia isolationofnuclearmicrosatellitesintheafricantimbertreelophiraalataochnaceaeandcrossamplificationinllanceolata1
AT staquetadrien isolationofnuclearmicrosatellitesintheafricantimbertreelophiraalataochnaceaeandcrossamplificationinllanceolata1
AT hardyolivierj isolationofnuclearmicrosatellitesintheafricantimbertreelophiraalataochnaceaeandcrossamplificationinllanceolata1