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In situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice
Ice-binding proteins (IBPs) have been isolated from various sea-ice organisms. Their characterisation points to a crucial role in protecting the organisms in sub-zero environments. However, their in situ abundance and diversity in natural sea-ice microbial communities is largely unknown. In this stu...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4611500/ https://www.ncbi.nlm.nih.gov/pubmed/25885562 http://dx.doi.org/10.1038/ismej.2015.43 |
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author | Uhlig, Christiane Kilpert, Fabian Frickenhaus, Stephan Kegel, Jessica U Krell, Andreas Mock, Thomas Valentin, Klaus Beszteri, Bánk |
author_facet | Uhlig, Christiane Kilpert, Fabian Frickenhaus, Stephan Kegel, Jessica U Krell, Andreas Mock, Thomas Valentin, Klaus Beszteri, Bánk |
author_sort | Uhlig, Christiane |
collection | PubMed |
description | Ice-binding proteins (IBPs) have been isolated from various sea-ice organisms. Their characterisation points to a crucial role in protecting the organisms in sub-zero environments. However, their in situ abundance and diversity in natural sea-ice microbial communities is largely unknown. In this study, we analysed the expression and phylogenetic diversity of eukaryotic IBP transcripts from microbial communities of Arctic and Antarctic sea ice. IBP transcripts were found in abundances similar to those of proteins involved in core cellular processes such as photosynthesis. Eighty-nine percent of the IBP transcripts grouped with known IBP sequences from diatoms, haptophytes and crustaceans, but the majority represented novel sequences not previously characterized in cultured organisms. The observed high eukaryotic IBP expression in natural eukaryotic sea ice communities underlines the essential role of IBPs for survival of many microorganisms in communities living under the extreme conditions of polar sea ice. |
format | Online Article Text |
id | pubmed-4611500 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-46115002015-11-02 In situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice Uhlig, Christiane Kilpert, Fabian Frickenhaus, Stephan Kegel, Jessica U Krell, Andreas Mock, Thomas Valentin, Klaus Beszteri, Bánk ISME J Short Communication Ice-binding proteins (IBPs) have been isolated from various sea-ice organisms. Their characterisation points to a crucial role in protecting the organisms in sub-zero environments. However, their in situ abundance and diversity in natural sea-ice microbial communities is largely unknown. In this study, we analysed the expression and phylogenetic diversity of eukaryotic IBP transcripts from microbial communities of Arctic and Antarctic sea ice. IBP transcripts were found in abundances similar to those of proteins involved in core cellular processes such as photosynthesis. Eighty-nine percent of the IBP transcripts grouped with known IBP sequences from diatoms, haptophytes and crustaceans, but the majority represented novel sequences not previously characterized in cultured organisms. The observed high eukaryotic IBP expression in natural eukaryotic sea ice communities underlines the essential role of IBPs for survival of many microorganisms in communities living under the extreme conditions of polar sea ice. Nature Publishing Group 2015-11 2015-04-17 /pmc/articles/PMC4611500/ /pubmed/25885562 http://dx.doi.org/10.1038/ismej.2015.43 Text en Copyright © 2015 International Society for Microbial Ecology http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Short Communication Uhlig, Christiane Kilpert, Fabian Frickenhaus, Stephan Kegel, Jessica U Krell, Andreas Mock, Thomas Valentin, Klaus Beszteri, Bánk In situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice |
title | In situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice |
title_full | In situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice |
title_fullStr | In situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice |
title_full_unstemmed | In situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice |
title_short | In situ expression of eukaryotic ice-binding proteins in microbial communities of Arctic and Antarctic sea ice |
title_sort | in situ expression of eukaryotic ice-binding proteins in microbial communities of arctic and antarctic sea ice |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4611500/ https://www.ncbi.nlm.nih.gov/pubmed/25885562 http://dx.doi.org/10.1038/ismej.2015.43 |
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