Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain Sphingopyxis sp. 113P3 (NBRC 111507)

Strain 113P3 was isolated from activated sludge and identified as a polyvinyl alcohol (PVA)-degrading Pseudomonas species; it was later reidentified as Sphingopyxis species. Only three genes are directly relevant to the metabolism of PVA and comprise the pva operon, which was deposited as accession...

Descripción completa

Detalles Bibliográficos
Autores principales: Ohtsubo, Yoshiyuki, Nagata, Yuji, Numata, Mitsuru, Tsuchikane, Kieko, Hosoyama, Akira, Yamazoe, Atsushi, Tsuda, Masataka, Fujita, Nobuyuki, Kawai, Fusako
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2015
Materias:
Prokaryotes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4611681/
https://www.ncbi.nlm.nih.gov/pubmed/26472829
http://dx.doi.org/10.1128/genomeA.01169-15
_version_ 1782396083530366976
author Ohtsubo, Yoshiyuki
Nagata, Yuji
Numata, Mitsuru
Tsuchikane, Kieko
Hosoyama, Akira
Yamazoe, Atsushi
Tsuda, Masataka
Fujita, Nobuyuki
Kawai, Fusako
author_facet Ohtsubo, Yoshiyuki
Nagata, Yuji
Numata, Mitsuru
Tsuchikane, Kieko
Hosoyama, Akira
Yamazoe, Atsushi
Tsuda, Masataka
Fujita, Nobuyuki
Kawai, Fusako
author_sort Ohtsubo, Yoshiyuki
collection PubMed
description Strain 113P3 was isolated from activated sludge and identified as a polyvinyl alcohol (PVA)-degrading Pseudomonas species; it was later reidentified as Sphingopyxis species. Only three genes are directly relevant to the metabolism of PVA and comprise the pva operon, which was deposited as accession no. AB190228. Here, we report the complete genome sequence of strain 113P3, which has been conserved as a stock culture (NBRC 111507) at the Biological Resource Center, National Institute of Technology and Evaluation (NITE) (Tokyo, Japan). The genome of strain 113P3 is composed of a 4.4-Mb circular chromosome and a 243-kb plasmid. The whole finishing was conducted in silico except for four PCRs. The sequence corresponding to AB190288 exists on the chromosome.
format Online
Article
Text
id pubmed-4611681
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher American Society for Microbiology
record_format MEDLINE/PubMed
spelling pubmed-46116812015-10-25 Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain Sphingopyxis sp. 113P3 (NBRC 111507) Ohtsubo, Yoshiyuki Nagata, Yuji Numata, Mitsuru Tsuchikane, Kieko Hosoyama, Akira Yamazoe, Atsushi Tsuda, Masataka Fujita, Nobuyuki Kawai, Fusako Genome Announc Prokaryotes Strain 113P3 was isolated from activated sludge and identified as a polyvinyl alcohol (PVA)-degrading Pseudomonas species; it was later reidentified as Sphingopyxis species. Only three genes are directly relevant to the metabolism of PVA and comprise the pva operon, which was deposited as accession no. AB190228. Here, we report the complete genome sequence of strain 113P3, which has been conserved as a stock culture (NBRC 111507) at the Biological Resource Center, National Institute of Technology and Evaluation (NITE) (Tokyo, Japan). The genome of strain 113P3 is composed of a 4.4-Mb circular chromosome and a 243-kb plasmid. The whole finishing was conducted in silico except for four PCRs. The sequence corresponding to AB190288 exists on the chromosome. American Society for Microbiology 2015-10-15 /pmc/articles/PMC4611681/ /pubmed/26472829 http://dx.doi.org/10.1128/genomeA.01169-15 Text en Copyright © 2015 Ohtsubo et al. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution 3.0 Unported license (http://creativecommons.org/licenses/by/3.0/) .
spellingShingle Prokaryotes
Ohtsubo, Yoshiyuki
Nagata, Yuji
Numata, Mitsuru
Tsuchikane, Kieko
Hosoyama, Akira
Yamazoe, Atsushi
Tsuda, Masataka
Fujita, Nobuyuki
Kawai, Fusako
Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain Sphingopyxis sp. 113P3 (NBRC 111507)
title Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain Sphingopyxis sp. 113P3 (NBRC 111507)
title_full Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain Sphingopyxis sp. 113P3 (NBRC 111507)
title_fullStr Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain Sphingopyxis sp. 113P3 (NBRC 111507)
title_full_unstemmed Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain Sphingopyxis sp. 113P3 (NBRC 111507)
title_short Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain Sphingopyxis sp. 113P3 (NBRC 111507)
title_sort complete genome sequence of polyvinyl alcohol-degrading strain sphingopyxis sp. 113p3 (nbrc 111507)
topic Prokaryotes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4611681/
https://www.ncbi.nlm.nih.gov/pubmed/26472829
http://dx.doi.org/10.1128/genomeA.01169-15
work_keys_str_mv AT ohtsuboyoshiyuki completegenomesequenceofpolyvinylalcoholdegradingstrainsphingopyxissp113p3nbrc111507
AT nagatayuji completegenomesequenceofpolyvinylalcoholdegradingstrainsphingopyxissp113p3nbrc111507
AT numatamitsuru completegenomesequenceofpolyvinylalcoholdegradingstrainsphingopyxissp113p3nbrc111507
AT tsuchikanekieko completegenomesequenceofpolyvinylalcoholdegradingstrainsphingopyxissp113p3nbrc111507
AT hosoyamaakira completegenomesequenceofpolyvinylalcoholdegradingstrainsphingopyxissp113p3nbrc111507
AT yamazoeatsushi completegenomesequenceofpolyvinylalcoholdegradingstrainsphingopyxissp113p3nbrc111507
AT tsudamasataka completegenomesequenceofpolyvinylalcoholdegradingstrainsphingopyxissp113p3nbrc111507
AT fujitanobuyuki completegenomesequenceofpolyvinylalcoholdegradingstrainsphingopyxissp113p3nbrc111507
AT kawaifusako completegenomesequenceofpolyvinylalcoholdegradingstrainsphingopyxissp113p3nbrc111507

Ejemplares similares