Cargando…

SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories

Abstract. More than 20 years ago, the (MNHN, Secretariat of the Fauna and Flora) published the first part of an atlas of the flora of France at a 20km spatial resolution, accounting for 645 taxa (Dupont 1990). Since then, at the national level, there has not been any work on this scale relating to f...

Descripción completa

Detalles Bibliográficos
Autores principales: Just, Anaïs, Gourvil, Johan, Millet, Jérôme, Boullet, Vincent, Milon, Thomas, Mandon, Isabelle, Dutrève, Bruno
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4611748/
https://www.ncbi.nlm.nih.gov/pubmed/26491386
http://dx.doi.org/10.3897/phytokeys.56.5723
_version_ 1782396098054193152
author Just, Anaïs
Gourvil, Johan
Millet, Jérôme
Boullet, Vincent
Milon, Thomas
Mandon, Isabelle
Dutrève, Bruno
author_facet Just, Anaïs
Gourvil, Johan
Millet, Jérôme
Boullet, Vincent
Milon, Thomas
Mandon, Isabelle
Dutrève, Bruno
author_sort Just, Anaïs
collection PubMed
description Abstract. More than 20 years ago, the (MNHN, Secretariat of the Fauna and Flora) published the first part of an atlas of the flora of France at a 20km spatial resolution, accounting for 645 taxa (Dupont 1990). Since then, at the national level, there has not been any work on this scale relating to flora distribution, despite the obvious need for a better understanding. In 2011, in response to this need, the (FCBN, http://www.fcbn.fr) launched an ambitious collaborative project involving eleven national botanical conservatories of France. The project aims to establish a formal procedure and standardized system for data hosting, aggregation and publication for four areas: flora, fungi, vegetation and habitats. In 2014, the first phase of the project led to the development of the national flora dataset: SIFlore. As it includes about 21 million records of flora occurrences, this is currently the most comprehensive dataset on the distribution of vascular plants (Tracheophyta) in the French territory. SIFlore contains information for about 15'454 plant taxa occurrences (indigenous and alien taxa) in metropolitan France and Reunion Island, from 1545 until 2014. The data records were originally collated from inventories, checklists, literature and herbarium records. SIFlore was developed by assembling flora datasets from the regional to the national level. At the regional level, source records are managed by the national botanical conservatories that are responsible for flora data collection and validation. In order to present our results, a geoportal was developed by the Fédération des conservatoires botaniques nationaux that allows the SIFlore dataset to be publically viewed. This portal is available at: http://siflore.fcbn.fr. As the FCBN belongs to the (SINP), a governmental program, the dataset is also accessible through the websites of the National Inventory of Natural Heritage (http://www.inpn.fr) and the Global Biodiversity Information Facility (http://www.gbif.fr). SIFlore is regularly updated with additional data records. It is also planned to expand the scope of the dataset to include information about taxon biology, phenology, ecology, chorology, frequency, conservation status and seed banks. A map showing an estimation of the dataset completeness (based on Jackknife 1 estimator) is presented and included as a numerical appendix. Purpose: SIFlore aims to make the data of the flora of France available at the national level for conservation, policy management and scientific research. Such a dataset will provide enough information to allow for macro-ecological reviews of species distribution patterns and, coupled with climatic or topographic datasets, the identification of determinants of these patterns. This dataset can be considered as the primary indicator of the current state of knowledge of flora distribution across France. At a policy level, and in the context of global warming, this should promote the adoption of new measures aiming to improve and intensify flora conservation and surveys.
format Online
Article
Text
id pubmed-4611748
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Pensoft Publishers
record_format MEDLINE/PubMed
spelling pubmed-46117482015-10-21 SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories Just, Anaïs Gourvil, Johan Millet, Jérôme Boullet, Vincent Milon, Thomas Mandon, Isabelle Dutrève, Bruno PhytoKeys Data Paper Abstract. More than 20 years ago, the (MNHN, Secretariat of the Fauna and Flora) published the first part of an atlas of the flora of France at a 20km spatial resolution, accounting for 645 taxa (Dupont 1990). Since then, at the national level, there has not been any work on this scale relating to flora distribution, despite the obvious need for a better understanding. In 2011, in response to this need, the (FCBN, http://www.fcbn.fr) launched an ambitious collaborative project involving eleven national botanical conservatories of France. The project aims to establish a formal procedure and standardized system for data hosting, aggregation and publication for four areas: flora, fungi, vegetation and habitats. In 2014, the first phase of the project led to the development of the national flora dataset: SIFlore. As it includes about 21 million records of flora occurrences, this is currently the most comprehensive dataset on the distribution of vascular plants (Tracheophyta) in the French territory. SIFlore contains information for about 15'454 plant taxa occurrences (indigenous and alien taxa) in metropolitan France and Reunion Island, from 1545 until 2014. The data records were originally collated from inventories, checklists, literature and herbarium records. SIFlore was developed by assembling flora datasets from the regional to the national level. At the regional level, source records are managed by the national botanical conservatories that are responsible for flora data collection and validation. In order to present our results, a geoportal was developed by the Fédération des conservatoires botaniques nationaux that allows the SIFlore dataset to be publically viewed. This portal is available at: http://siflore.fcbn.fr. As the FCBN belongs to the (SINP), a governmental program, the dataset is also accessible through the websites of the National Inventory of Natural Heritage (http://www.inpn.fr) and the Global Biodiversity Information Facility (http://www.gbif.fr). SIFlore is regularly updated with additional data records. It is also planned to expand the scope of the dataset to include information about taxon biology, phenology, ecology, chorology, frequency, conservation status and seed banks. A map showing an estimation of the dataset completeness (based on Jackknife 1 estimator) is presented and included as a numerical appendix. Purpose: SIFlore aims to make the data of the flora of France available at the national level for conservation, policy management and scientific research. Such a dataset will provide enough information to allow for macro-ecological reviews of species distribution patterns and, coupled with climatic or topographic datasets, the identification of determinants of these patterns. This dataset can be considered as the primary indicator of the current state of knowledge of flora distribution across France. At a policy level, and in the context of global warming, this should promote the adoption of new measures aiming to improve and intensify flora conservation and surveys. Pensoft Publishers 2015-09-29 /pmc/articles/PMC4611748/ /pubmed/26491386 http://dx.doi.org/10.3897/phytokeys.56.5723 Text en Anaïs Just, Johan Gourvil, Jérôme Millet, Vincent Boullet, Thomas Milon, Isabelle Mandon, Bruno Dutrève http://creativecommons.org/licenses/by/4.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Data Paper
Just, Anaïs
Gourvil, Johan
Millet, Jérôme
Boullet, Vincent
Milon, Thomas
Mandon, Isabelle
Dutrève, Bruno
SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories
title SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories
title_full SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories
title_fullStr SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories
title_full_unstemmed SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories
title_short SIFlore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in France: Results of a collaborative project coordinated by the Federation of the National Botanical Conservatories
title_sort siflore, a dataset of geographical distribution of vascular plants covering five centuries of knowledge in france: results of a collaborative project coordinated by the federation of the national botanical conservatories
topic Data Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4611748/
https://www.ncbi.nlm.nih.gov/pubmed/26491386
http://dx.doi.org/10.3897/phytokeys.56.5723
work_keys_str_mv AT justanais sifloreadatasetofgeographicaldistributionofvascularplantscoveringfivecenturiesofknowledgeinfranceresultsofacollaborativeprojectcoordinatedbythefederationofthenationalbotanicalconservatories
AT gourviljohan sifloreadatasetofgeographicaldistributionofvascularplantscoveringfivecenturiesofknowledgeinfranceresultsofacollaborativeprojectcoordinatedbythefederationofthenationalbotanicalconservatories
AT milletjerome sifloreadatasetofgeographicaldistributionofvascularplantscoveringfivecenturiesofknowledgeinfranceresultsofacollaborativeprojectcoordinatedbythefederationofthenationalbotanicalconservatories
AT boulletvincent sifloreadatasetofgeographicaldistributionofvascularplantscoveringfivecenturiesofknowledgeinfranceresultsofacollaborativeprojectcoordinatedbythefederationofthenationalbotanicalconservatories
AT milonthomas sifloreadatasetofgeographicaldistributionofvascularplantscoveringfivecenturiesofknowledgeinfranceresultsofacollaborativeprojectcoordinatedbythefederationofthenationalbotanicalconservatories
AT mandonisabelle sifloreadatasetofgeographicaldistributionofvascularplantscoveringfivecenturiesofknowledgeinfranceresultsofacollaborativeprojectcoordinatedbythefederationofthenationalbotanicalconservatories
AT dutrevebruno sifloreadatasetofgeographicaldistributionofvascularplantscoveringfivecenturiesofknowledgeinfranceresultsofacollaborativeprojectcoordinatedbythefederationofthenationalbotanicalconservatories