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Biconnectivity of the cellular metabolism: A cross-species study and its implication for human diseases
The maintenance of stability during perturbations is essential for living organisms, and cellular networks organize multiple pathways to enable elements to remain connected and communicate, even when some pathways are broken. Here, we evaluated the biconnectivity of the metabolic networks of 506 spe...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4614848/ https://www.ncbi.nlm.nih.gov/pubmed/26490723 http://dx.doi.org/10.1038/srep15567 |
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author | Kim, P. Lee, D.-S. Kahng, B. |
author_facet | Kim, P. Lee, D.-S. Kahng, B. |
author_sort | Kim, P. |
collection | PubMed |
description | The maintenance of stability during perturbations is essential for living organisms, and cellular networks organize multiple pathways to enable elements to remain connected and communicate, even when some pathways are broken. Here, we evaluated the biconnectivity of the metabolic networks of 506 species in terms of the clustering coefficients and the largest biconnected components (LBCs), wherein a biconnected component (BC) indicates a set of nodes in which every pair is connected by more than one path. Via comparison with the rewired networks, we illustrated how biconnectivity in cellular metabolism is achieved on small and large scales. Defining the biconnectivity of individual metabolic compounds by counting the number of species in which the compound belonged to the LBC, we demonstrated that biconnectivity is significantly correlated with the evolutionary age and functional importance of a compound. The prevalence of diseases associated with each metabolic compound quantifies the compounds vulnerability, i.e., the likelihood that it will cause a metabolic disorder. Moreover, the vulnerability depends on both the biconnectivity and the lethality of the compound. This fact can be used in drug discovery and medical treatments. |
format | Online Article Text |
id | pubmed-4614848 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-46148482015-10-29 Biconnectivity of the cellular metabolism: A cross-species study and its implication for human diseases Kim, P. Lee, D.-S. Kahng, B. Sci Rep Article The maintenance of stability during perturbations is essential for living organisms, and cellular networks organize multiple pathways to enable elements to remain connected and communicate, even when some pathways are broken. Here, we evaluated the biconnectivity of the metabolic networks of 506 species in terms of the clustering coefficients and the largest biconnected components (LBCs), wherein a biconnected component (BC) indicates a set of nodes in which every pair is connected by more than one path. Via comparison with the rewired networks, we illustrated how biconnectivity in cellular metabolism is achieved on small and large scales. Defining the biconnectivity of individual metabolic compounds by counting the number of species in which the compound belonged to the LBC, we demonstrated that biconnectivity is significantly correlated with the evolutionary age and functional importance of a compound. The prevalence of diseases associated with each metabolic compound quantifies the compounds vulnerability, i.e., the likelihood that it will cause a metabolic disorder. Moreover, the vulnerability depends on both the biconnectivity and the lethality of the compound. This fact can be used in drug discovery and medical treatments. Nature Publishing Group 2015-10-22 /pmc/articles/PMC4614848/ /pubmed/26490723 http://dx.doi.org/10.1038/srep15567 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Kim, P. Lee, D.-S. Kahng, B. Biconnectivity of the cellular metabolism: A cross-species study and its implication for human diseases |
title | Biconnectivity of the cellular metabolism: A cross-species study and its implication for human diseases |
title_full | Biconnectivity of the cellular metabolism: A cross-species study and its implication for human diseases |
title_fullStr | Biconnectivity of the cellular metabolism: A cross-species study and its implication for human diseases |
title_full_unstemmed | Biconnectivity of the cellular metabolism: A cross-species study and its implication for human diseases |
title_short | Biconnectivity of the cellular metabolism: A cross-species study and its implication for human diseases |
title_sort | biconnectivity of the cellular metabolism: a cross-species study and its implication for human diseases |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4614848/ https://www.ncbi.nlm.nih.gov/pubmed/26490723 http://dx.doi.org/10.1038/srep15567 |
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