Cargando…

Nucleus and cytoplasm segmentation in microscopic images using K-means clustering and region growing

BACKGROUND: Segmentation of leukocytes acts as the foundation for all automated image-based hematological disease recognition systems. Most of the time, hematologists are interested in evaluation of white blood cells only. Digital image processing techniques can help them in their analysis and diagn...

Descripción completa

Detalles Bibliográficos
Autores principales: Sarrafzadeh, Omid, Dehnavi, Alireza Mehri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Medknow Publications & Media Pvt Ltd 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617159/
https://www.ncbi.nlm.nih.gov/pubmed/26605213
http://dx.doi.org/10.4103/2277-9175.163998
_version_ 1782396773739790336
author Sarrafzadeh, Omid
Dehnavi, Alireza Mehri
author_facet Sarrafzadeh, Omid
Dehnavi, Alireza Mehri
author_sort Sarrafzadeh, Omid
collection PubMed
description BACKGROUND: Segmentation of leukocytes acts as the foundation for all automated image-based hematological disease recognition systems. Most of the time, hematologists are interested in evaluation of white blood cells only. Digital image processing techniques can help them in their analysis and diagnosis. MATERIALS AND METHODS: The main objective of this paper is to detect leukocytes from a blood smear microscopic image and segment them into their two dominant elements, nucleus and cytoplasm. The segmentation is conducted using two stages of applying K-means clustering. First, the nuclei are segmented using K-means clustering. Then, a proposed method based on region growing is applied to separate the connected nuclei. Next, the nuclei are subtracted from the original image. Finally, the cytoplasm is segmented using the second stage of K-means clustering. RESULTS: The results indicate that the proposed method is able to extract the nucleus and cytoplasm regions accurately and works well even though there is no significant contrast between the components in the image. CONCLUSIONS: In this paper, a method based on K-means clustering and region growing is proposed in order to detect leukocytes from a blood smear microscopic image and segment its components, the nucleus and the cytoplasm. As region growing step of the algorithm relies on the information of edges, it will not able to separate the connected nuclei more accurately in poor edges and it requires at least a weak edge to exist between the nuclei. The nucleus and cytoplasm segments of a leukocyte can be used for feature extraction and classification which leads to automated leukemia detection.
format Online
Article
Text
id pubmed-4617159
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Medknow Publications & Media Pvt Ltd
record_format MEDLINE/PubMed
spelling pubmed-46171592015-11-24 Nucleus and cytoplasm segmentation in microscopic images using K-means clustering and region growing Sarrafzadeh, Omid Dehnavi, Alireza Mehri Adv Biomed Res Original Article BACKGROUND: Segmentation of leukocytes acts as the foundation for all automated image-based hematological disease recognition systems. Most of the time, hematologists are interested in evaluation of white blood cells only. Digital image processing techniques can help them in their analysis and diagnosis. MATERIALS AND METHODS: The main objective of this paper is to detect leukocytes from a blood smear microscopic image and segment them into their two dominant elements, nucleus and cytoplasm. The segmentation is conducted using two stages of applying K-means clustering. First, the nuclei are segmented using K-means clustering. Then, a proposed method based on region growing is applied to separate the connected nuclei. Next, the nuclei are subtracted from the original image. Finally, the cytoplasm is segmented using the second stage of K-means clustering. RESULTS: The results indicate that the proposed method is able to extract the nucleus and cytoplasm regions accurately and works well even though there is no significant contrast between the components in the image. CONCLUSIONS: In this paper, a method based on K-means clustering and region growing is proposed in order to detect leukocytes from a blood smear microscopic image and segment its components, the nucleus and the cytoplasm. As region growing step of the algorithm relies on the information of edges, it will not able to separate the connected nuclei more accurately in poor edges and it requires at least a weak edge to exist between the nuclei. The nucleus and cytoplasm segments of a leukocyte can be used for feature extraction and classification which leads to automated leukemia detection. Medknow Publications & Media Pvt Ltd 2015-08-31 /pmc/articles/PMC4617159/ /pubmed/26605213 http://dx.doi.org/10.4103/2277-9175.163998 Text en Copyright: © 2015 Sarrafzadeh. http://creativecommons.org/licenses/by-nc-sa/3.0 This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Original Article
Sarrafzadeh, Omid
Dehnavi, Alireza Mehri
Nucleus and cytoplasm segmentation in microscopic images using K-means clustering and region growing
title Nucleus and cytoplasm segmentation in microscopic images using K-means clustering and region growing
title_full Nucleus and cytoplasm segmentation in microscopic images using K-means clustering and region growing
title_fullStr Nucleus and cytoplasm segmentation in microscopic images using K-means clustering and region growing
title_full_unstemmed Nucleus and cytoplasm segmentation in microscopic images using K-means clustering and region growing
title_short Nucleus and cytoplasm segmentation in microscopic images using K-means clustering and region growing
title_sort nucleus and cytoplasm segmentation in microscopic images using k-means clustering and region growing
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617159/
https://www.ncbi.nlm.nih.gov/pubmed/26605213
http://dx.doi.org/10.4103/2277-9175.163998
work_keys_str_mv AT sarrafzadehomid nucleusandcytoplasmsegmentationinmicroscopicimagesusingkmeansclusteringandregiongrowing
AT dehnavialirezamehri nucleusandcytoplasmsegmentationinmicroscopicimagesusingkmeansclusteringandregiongrowing