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Comparison of eigensolvers for symmetric band matrices
We compare different algorithms for computing eigenvalues and eigenvectors of a symmetric band matrix across a wide range of synthetic test problems. Of particular interest is a comparison of state-of-the-art tridiagonalization-based methods as implemented in Lapack or Plasma on the one hand, and th...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier B.V
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617464/ https://www.ncbi.nlm.nih.gov/pubmed/26594079 http://dx.doi.org/10.1016/j.scico.2014.01.005 |
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author | Moldaschl, Michael Gansterer, Wilfried N. |
author_facet | Moldaschl, Michael Gansterer, Wilfried N. |
author_sort | Moldaschl, Michael |
collection | PubMed |
description | We compare different algorithms for computing eigenvalues and eigenvectors of a symmetric band matrix across a wide range of synthetic test problems. Of particular interest is a comparison of state-of-the-art tridiagonalization-based methods as implemented in Lapack or Plasma on the one hand, and the block divide-and-conquer (BD&C) algorithm as well as the block twisted factorization (BTF) method on the other hand. The BD&C algorithm does not require tridiagonalization of the original band matrix at all, and the current version of the BTF method tridiagonalizes the original band matrix only for computing the eigenvalues. Avoiding the tridiagonalization process sidesteps the cost of backtransformation of the eigenvectors. Beyond that, we discovered another disadvantage of the backtransformation process for band matrices: In several scenarios, a lot of gradual underflow is observed in the (optional) accumulation of the transformation matrix and in the (obligatory) backtransformation step. According to the IEEE 754 standard for floating-point arithmetic, this implies many operations with subnormal (denormalized) numbers, which causes severe slowdowns compared to the other algorithms without backtransformation of the eigenvectors. We illustrate that in these cases the performance of existing methods from Lapack and Plasma reaches a competitive level only if subnormal numbers are disabled (and thus the IEEE standard is violated). Overall, our performance studies illustrate that if the problem size is large enough relative to the bandwidth, BD&C tends to achieve the highest performance of all methods if the spectrum to be computed is clustered. For test problems with well separated eigenvalues, the BTF method tends to become the fastest algorithm with growing problem size. |
format | Online Article Text |
id | pubmed-4617464 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Elsevier B.V |
record_format | MEDLINE/PubMed |
spelling | pubmed-46174642015-11-20 Comparison of eigensolvers for symmetric band matrices Moldaschl, Michael Gansterer, Wilfried N. Sci Comput Program Article We compare different algorithms for computing eigenvalues and eigenvectors of a symmetric band matrix across a wide range of synthetic test problems. Of particular interest is a comparison of state-of-the-art tridiagonalization-based methods as implemented in Lapack or Plasma on the one hand, and the block divide-and-conquer (BD&C) algorithm as well as the block twisted factorization (BTF) method on the other hand. The BD&C algorithm does not require tridiagonalization of the original band matrix at all, and the current version of the BTF method tridiagonalizes the original band matrix only for computing the eigenvalues. Avoiding the tridiagonalization process sidesteps the cost of backtransformation of the eigenvectors. Beyond that, we discovered another disadvantage of the backtransformation process for band matrices: In several scenarios, a lot of gradual underflow is observed in the (optional) accumulation of the transformation matrix and in the (obligatory) backtransformation step. According to the IEEE 754 standard for floating-point arithmetic, this implies many operations with subnormal (denormalized) numbers, which causes severe slowdowns compared to the other algorithms without backtransformation of the eigenvectors. We illustrate that in these cases the performance of existing methods from Lapack and Plasma reaches a competitive level only if subnormal numbers are disabled (and thus the IEEE standard is violated). Overall, our performance studies illustrate that if the problem size is large enough relative to the bandwidth, BD&C tends to achieve the highest performance of all methods if the spectrum to be computed is clustered. For test problems with well separated eigenvalues, the BTF method tends to become the fastest algorithm with growing problem size. Elsevier B.V 2014-09-15 /pmc/articles/PMC4617464/ /pubmed/26594079 http://dx.doi.org/10.1016/j.scico.2014.01.005 Text en © 2014 The Authors http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/3.0/). |
spellingShingle | Article Moldaschl, Michael Gansterer, Wilfried N. Comparison of eigensolvers for symmetric band matrices |
title | Comparison of eigensolvers for symmetric band matrices |
title_full | Comparison of eigensolvers for symmetric band matrices |
title_fullStr | Comparison of eigensolvers for symmetric band matrices |
title_full_unstemmed | Comparison of eigensolvers for symmetric band matrices |
title_short | Comparison of eigensolvers for symmetric band matrices |
title_sort | comparison of eigensolvers for symmetric band matrices |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617464/ https://www.ncbi.nlm.nih.gov/pubmed/26594079 http://dx.doi.org/10.1016/j.scico.2014.01.005 |
work_keys_str_mv | AT moldaschlmichael comparisonofeigensolversforsymmetricbandmatrices AT ganstererwilfriedn comparisonofeigensolversforsymmetricbandmatrices |