Cargando…
Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes
BACKGROUND: The New Zealand glowworm is the larva of a carnivorous fungus gnat that produces bioluminescence to attract prey. The bioluminescent system of the glowworm is evolutionarily distinct from other well-characterised systems, especially that of the fireflies, and the molecules involved have...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617951/ https://www.ncbi.nlm.nih.gov/pubmed/26486607 http://dx.doi.org/10.1186/s12864-015-2006-2 |
_version_ | 1782396861855825920 |
---|---|
author | Sharpe, Miriam L. Dearden, Peter K. Gimenez, Gregory Krause, Kurt L. |
author_facet | Sharpe, Miriam L. Dearden, Peter K. Gimenez, Gregory Krause, Kurt L. |
author_sort | Sharpe, Miriam L. |
collection | PubMed |
description | BACKGROUND: The New Zealand glowworm is the larva of a carnivorous fungus gnat that produces bioluminescence to attract prey. The bioluminescent system of the glowworm is evolutionarily distinct from other well-characterised systems, especially that of the fireflies, and the molecules involved have not yet been identified. We have used high throughput sequencing technology to produce a transcriptome for the glowworm and identify transcripts encoding proteins that are likely to be involved in glowworm bioluminescence. RESULTS: Here we report the sequencing and annotation of the first transcriptome of the glowworm, and a differential analysis of expression from the glowworm light organ compared with non-light organ tissue. The analysis identified six transcripts encoding proteins that are potentially involved in glowworm bioluminescence. Three of these proteins are members of the ANL superfamily of adenylating enzymes, with similar amino acid sequences to that of the luciferase enzyme found in fireflies (31 to 37 % identical), and are candidate luciferases for the glowworm bioluminescent system. The remaining three transcripts encode putative aminoacylase, phosphatidylethanolamine-binding and glutathione S-transferase proteins. CONCLUSIONS: This research provides a basis for further biochemical studies into how the glowworm produces light, and a source of genetic information to aid future ecological and evolutionary studies of the glowworm. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12864-015-2006-2) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4617951 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-46179512015-10-25 Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes Sharpe, Miriam L. Dearden, Peter K. Gimenez, Gregory Krause, Kurt L. BMC Genomics Research Article BACKGROUND: The New Zealand glowworm is the larva of a carnivorous fungus gnat that produces bioluminescence to attract prey. The bioluminescent system of the glowworm is evolutionarily distinct from other well-characterised systems, especially that of the fireflies, and the molecules involved have not yet been identified. We have used high throughput sequencing technology to produce a transcriptome for the glowworm and identify transcripts encoding proteins that are likely to be involved in glowworm bioluminescence. RESULTS: Here we report the sequencing and annotation of the first transcriptome of the glowworm, and a differential analysis of expression from the glowworm light organ compared with non-light organ tissue. The analysis identified six transcripts encoding proteins that are potentially involved in glowworm bioluminescence. Three of these proteins are members of the ANL superfamily of adenylating enzymes, with similar amino acid sequences to that of the luciferase enzyme found in fireflies (31 to 37 % identical), and are candidate luciferases for the glowworm bioluminescent system. The remaining three transcripts encode putative aminoacylase, phosphatidylethanolamine-binding and glutathione S-transferase proteins. CONCLUSIONS: This research provides a basis for further biochemical studies into how the glowworm produces light, and a source of genetic information to aid future ecological and evolutionary studies of the glowworm. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12864-015-2006-2) contains supplementary material, which is available to authorized users. BioMed Central 2015-10-21 /pmc/articles/PMC4617951/ /pubmed/26486607 http://dx.doi.org/10.1186/s12864-015-2006-2 Text en © Sharpe et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Article Sharpe, Miriam L. Dearden, Peter K. Gimenez, Gregory Krause, Kurt L. Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes |
title | Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes |
title_full | Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes |
title_fullStr | Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes |
title_full_unstemmed | Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes |
title_short | Comparative RNA seq analysis of the New Zealand glowworm Arachnocampa luminosa reveals bioluminescence-related genes |
title_sort | comparative rna seq analysis of the new zealand glowworm arachnocampa luminosa reveals bioluminescence-related genes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4617951/ https://www.ncbi.nlm.nih.gov/pubmed/26486607 http://dx.doi.org/10.1186/s12864-015-2006-2 |
work_keys_str_mv | AT sharpemiriaml comparativernaseqanalysisofthenewzealandglowwormarachnocampaluminosarevealsbioluminescencerelatedgenes AT deardenpeterk comparativernaseqanalysisofthenewzealandglowwormarachnocampaluminosarevealsbioluminescencerelatedgenes AT gimenezgregory comparativernaseqanalysisofthenewzealandglowwormarachnocampaluminosarevealsbioluminescencerelatedgenes AT krausekurtl comparativernaseqanalysisofthenewzealandglowwormarachnocampaluminosarevealsbioluminescencerelatedgenes |