Cargando…

Whole genome SNP genotype piecemeal imputation

BACKGROUND: Despite ongoing reductions in the cost of sequencing technologies, whole genome SNP genotype imputation is often used as an alternative for obtaining abundant SNP genotypes for genome wide association studies. Several existing genotype imputation methods can be efficient for this purpose...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Yining, Wylie, Tim, Stothard, Paul, Lin, Guohui
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4619096/ https://www.ncbi.nlm.nih.gov/pubmed/26498158 http://dx.doi.org/10.1186/s12859-015-0770-2

Ejemplares similares

Fast accurate missing SNP genotype local imputation
por: Wang, Yining, et al.
Publicado: (2012)

Novel methods for genotype imputation to whole-genome sequence and a simple linear model to predict imputation accuracy
por: Larmer, Steven G., et al.
Publicado: (2017)

Imputation of missing genotypes: an empirical evaluation of IMPUTE
por: Zhao, Zhenming, et al.
Publicado: (2008)

Whole-genome characterization in pedigreed non-human primates using genotyping-by-sequencing (GBS) and imputation
por: Bimber, Benjamin N., et al.
Publicado: (2016)

Comparison of Genotype Imputation for SNP Array and Low-Coverage Whole-Genome Sequencing Data
por: Deng, Tianyu, et al.
Publicado: (2022)

Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
por: Ritchie, Matthew E, et al.
Publicado: (2011)

Impact of pre-imputation SNP-filtering on genotype imputation results
por: Roshyara, Nab Raj, et al.
Publicado: (2014)

Strategies and utility of imputed SNP genotypes for genomic analysis in dairy cattle
por: Khatkar, Mehar S, et al.
Publicado: (2012)

UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study
por: Qi, Peng, et al.
Publicado: (2018)

Accuracy of imputation to whole-genome sequence in sheep
por: Bolormaa, Sunduimijid, et al.
Publicado: (2019)

Pooled DNA genotyping on Affymetrix SNP genotyping arrays
por: Kirov, George, et al.
Publicado: (2006)

Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome
por: Amaral, Andreia J, et al.
Publicado: (2009)

Comparison of three PCR-based assays for SNP genotyping in plants
por: Broccanello, Chiara, et al.
Publicado: (2018)

Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: II: carcass merit traits
por: Wang, Yining, et al.
Publicado: (2020)

Probability genotype imputation method and integrated weighted lasso for QTL identification
por: Demetrashvili, Nino, et al.
Publicado: (2013)

Genetic architecture of quantitative traits in beef cattle revealed by genome wide association studies of imputed whole genome sequence variants: I: feed efficiency and component traits
por: Zhang, Feng, et al.
Publicado: (2020)

I-Impute: a self-consistent method to impute single cell RNA sequencing data
por: Feng, Xikang, et al.
Publicado: (2020)

Advantages of Amplifluor-like SNP markers over KASP in plant genotyping
por: Jatayev, Satyvaldy, et al.
Publicado: (2017)

Comparison of PrASE and Pyrosequencing for SNP Genotyping
por: Käller, Max, et al.
Publicado: (2006)

Silhouette scores for assessment of SNP genotype clusters
por: Lovmar, Lovisa, et al.
Publicado: (2005)

A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes
por: Hickey, John M, et al.
Publicado: (2011)

Design of low density SNP chips for genotype imputation in layer chicken
por: Herry, Florian, et al.
Publicado: (2018)

A new approach for efficient genotype imputation using information from relatives
por: Sargolzaei, Mehdi, et al.
Publicado: (2014)

Estimating the accuracy of geographical imputation
por: Henry, Kevin A, et al.
Publicado: (2008)

Imputation of Microsatellite Alleles from Dense SNP Genotypes for Parental Verification
por: McClure, Matthew, et al.
Publicado: (2012)

A new chicken 55K SNP genotyping array
por: Liu, Ranran, et al.
Publicado: (2019)

Reuse of imputed data in microarray analysis increases imputation efficiency
por: Kim, Ki-Yeol, et al.
Publicado: (2004)

COVID-19 and the Curse of Piecemeal Perspectives
por: Walzer, Chris
Publicado: (2020)

Single-step SNP-BLUP with on-the-fly imputed genotypes and residual polygenic effects
por: Taskinen, Matti, et al.
Publicado: (2017)

AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications
por: Van Geystelen, Anneleen, et al.
Publicado: (2013)

Genotype Imputation with Thousands of Genomes
por: Howie, Bryan, et al.
Publicado: (2011)

Assessing runs of Homozygosity: a comparison of SNP Array and whole genome sequence low coverage data
por: Ceballos, Francisco C., et al.
Publicado: (2018)

Exploring the optimal strategy of imputation from SNP array to whole-genome sequencing data in farm animals
por: Jiang, Yifan, et al.
Publicado: (2022)

Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants
por: Yang, Guo-Qian, et al.
Publicado: (2016)

Improved branch and bound algorithm for detecting SNP-SNP interactions in breast cancer
por: Chuang, Li-Yeh, et al.
Publicado: (2013)

DrImpute: imputing dropout events in single cell RNA sequencing data
por: Gong, Wuming, et al.
Publicado: (2018)

Optimizing multiplex SNP-based data analysis for genotyping of Mycobacterium tuberculosis isolates
por: Sengstake, Sarah, et al.
Publicado: (2014)

SNP high-throughput screening in grapevine using the SNPlex™ genotyping system
por: Pindo, Massimo, et al.
Publicado: (2008)

A new strategy for enhancing imputation quality of rare variants from next-generation sequencing data via combining SNP and exome chip data
por: Kim, Young Jin, et al.
Publicado: (2015)

Missing data and multiple imputation in clinical epidemiological research
por: Pedersen, Alma B, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_c7b1ek2l7lrstj1bgmjhumghnq