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Diagnosis of Lung Cancer by Fractal Analysis of Damaged DNA
Cancer starts when cells in a part of the body start to grow out of control. In fact cells become cancer cells because of DNA damage. A DNA walk of a genome represents how the frequency of each nucleotide of a pairing nucleotide couple changes locally. In this research in order to study the cancer g...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4619900/ https://www.ncbi.nlm.nih.gov/pubmed/26539245 http://dx.doi.org/10.1155/2015/242695 |
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author | Namazi, Hamidreza Kiminezhadmalaie, Mona |
author_facet | Namazi, Hamidreza Kiminezhadmalaie, Mona |
author_sort | Namazi, Hamidreza |
collection | PubMed |
description | Cancer starts when cells in a part of the body start to grow out of control. In fact cells become cancer cells because of DNA damage. A DNA walk of a genome represents how the frequency of each nucleotide of a pairing nucleotide couple changes locally. In this research in order to study the cancer genes, DNA walk plots of genomes of patients with lung cancer were generated using a program written in MATLAB language. The data so obtained was checked for fractal property by computing the fractal dimension using a program written in MATLAB. Also, the correlation of damaged DNA was studied using the Hurst exponent measure. We have found that the damaged DNA sequences are exhibiting higher degree of fractality and less correlation compared with normal DNA sequences. So we confirmed this method can be used for early detection of lung cancer. The method introduced in this research not only is useful for diagnosis of lung cancer but also can be applied for detection and growth analysis of different types of cancers. |
format | Online Article Text |
id | pubmed-4619900 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-46199002015-11-04 Diagnosis of Lung Cancer by Fractal Analysis of Damaged DNA Namazi, Hamidreza Kiminezhadmalaie, Mona Comput Math Methods Med Research Article Cancer starts when cells in a part of the body start to grow out of control. In fact cells become cancer cells because of DNA damage. A DNA walk of a genome represents how the frequency of each nucleotide of a pairing nucleotide couple changes locally. In this research in order to study the cancer genes, DNA walk plots of genomes of patients with lung cancer were generated using a program written in MATLAB language. The data so obtained was checked for fractal property by computing the fractal dimension using a program written in MATLAB. Also, the correlation of damaged DNA was studied using the Hurst exponent measure. We have found that the damaged DNA sequences are exhibiting higher degree of fractality and less correlation compared with normal DNA sequences. So we confirmed this method can be used for early detection of lung cancer. The method introduced in this research not only is useful for diagnosis of lung cancer but also can be applied for detection and growth analysis of different types of cancers. Hindawi Publishing Corporation 2015 2015-10-11 /pmc/articles/PMC4619900/ /pubmed/26539245 http://dx.doi.org/10.1155/2015/242695 Text en Copyright © 2015 H. Namazi and M. Kiminezhadmalaie. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Namazi, Hamidreza Kiminezhadmalaie, Mona Diagnosis of Lung Cancer by Fractal Analysis of Damaged DNA |
title | Diagnosis of Lung Cancer by Fractal Analysis of Damaged DNA |
title_full | Diagnosis of Lung Cancer by Fractal Analysis of Damaged DNA |
title_fullStr | Diagnosis of Lung Cancer by Fractal Analysis of Damaged DNA |
title_full_unstemmed | Diagnosis of Lung Cancer by Fractal Analysis of Damaged DNA |
title_short | Diagnosis of Lung Cancer by Fractal Analysis of Damaged DNA |
title_sort | diagnosis of lung cancer by fractal analysis of damaged dna |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4619900/ https://www.ncbi.nlm.nih.gov/pubmed/26539245 http://dx.doi.org/10.1155/2015/242695 |
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