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Three dimensional imaging of gold-nanoparticles tagged samples using phase retrieval with two focus planes

Optical sectioning microscopy can provide highly detailed three dimensional (3D) images of biological samples. However, it requires acquisition of many images per volume, and is therefore time consuming, and may not be suitable for live cell 3D imaging. We propose the use of the modified Gerchberg-S...

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Detalles Bibliográficos
Autores principales: Ilovitsh, Tali, Ilovitsh, Asaf, Weiss, Aryeh, Meir, Rinat, Zalevsky, Zeev
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4620448/
https://www.ncbi.nlm.nih.gov/pubmed/26498517
http://dx.doi.org/10.1038/srep15473
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author Ilovitsh, Tali
Ilovitsh, Asaf
Weiss, Aryeh
Meir, Rinat
Zalevsky, Zeev
author_facet Ilovitsh, Tali
Ilovitsh, Asaf
Weiss, Aryeh
Meir, Rinat
Zalevsky, Zeev
author_sort Ilovitsh, Tali
collection PubMed
description Optical sectioning microscopy can provide highly detailed three dimensional (3D) images of biological samples. However, it requires acquisition of many images per volume, and is therefore time consuming, and may not be suitable for live cell 3D imaging. We propose the use of the modified Gerchberg-Saxton phase retrieval algorithm to enable full 3D imaging of gold-particle tagged samples using only two images. The reconstructed field is free space propagated to all other focus planes using post processing, and the 2D z-stack is merged to create a 3D image of the sample with high fidelity. Because we propose to apply the phase retrieving on nano particles, the regular ambiguities typical to the Gerchberg-Saxton algorithm, are eliminated. The proposed concept is presented and validated both on simulated data as well as experimentally.
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spelling pubmed-46204482015-10-29 Three dimensional imaging of gold-nanoparticles tagged samples using phase retrieval with two focus planes Ilovitsh, Tali Ilovitsh, Asaf Weiss, Aryeh Meir, Rinat Zalevsky, Zeev Sci Rep Article Optical sectioning microscopy can provide highly detailed three dimensional (3D) images of biological samples. However, it requires acquisition of many images per volume, and is therefore time consuming, and may not be suitable for live cell 3D imaging. We propose the use of the modified Gerchberg-Saxton phase retrieval algorithm to enable full 3D imaging of gold-particle tagged samples using only two images. The reconstructed field is free space propagated to all other focus planes using post processing, and the 2D z-stack is merged to create a 3D image of the sample with high fidelity. Because we propose to apply the phase retrieving on nano particles, the regular ambiguities typical to the Gerchberg-Saxton algorithm, are eliminated. The proposed concept is presented and validated both on simulated data as well as experimentally. Nature Publishing Group 2015-10-26 /pmc/articles/PMC4620448/ /pubmed/26498517 http://dx.doi.org/10.1038/srep15473 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Ilovitsh, Tali
Ilovitsh, Asaf
Weiss, Aryeh
Meir, Rinat
Zalevsky, Zeev
Three dimensional imaging of gold-nanoparticles tagged samples using phase retrieval with two focus planes
title Three dimensional imaging of gold-nanoparticles tagged samples using phase retrieval with two focus planes
title_full Three dimensional imaging of gold-nanoparticles tagged samples using phase retrieval with two focus planes
title_fullStr Three dimensional imaging of gold-nanoparticles tagged samples using phase retrieval with two focus planes
title_full_unstemmed Three dimensional imaging of gold-nanoparticles tagged samples using phase retrieval with two focus planes
title_short Three dimensional imaging of gold-nanoparticles tagged samples using phase retrieval with two focus planes
title_sort three dimensional imaging of gold-nanoparticles tagged samples using phase retrieval with two focus planes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4620448/
https://www.ncbi.nlm.nih.gov/pubmed/26498517
http://dx.doi.org/10.1038/srep15473
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