Cargando…

Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species

Cytoplasmic chloroplast (cp) genomes and nuclear ribosomal DNA (nR) are the primary sequences used to understand plant diversity and evolution. We introduce a high-throughput method to simultaneously obtain complete cp and nR sequences using Illumina platform whole-genome sequence. We applied the me...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kim, Kyunghee, Lee, Sang-Choon, Lee, Junki, Yu, Yeisoo, Yang, Kiwoung, Choi, Beom-Soon, Koh, Hee-Jong, Waminal, Nomar Espinosa, Choi, Hong-Il, Kim, Nam-Hoon, Jang, Woojong, Park, Hyun-Seung, Lee, Jonghoon, Lee, Hyun Oh, Joh, Ho Jun, Lee, Hyeon Ju, Park, Jee Young, Perumal, Sampath, Jayakodi, Murukarthick, Lee, Yun Sun, Kim, Backki, Copetti, Dario, Kim, Soonok, Kim, Sunggil, Lim, Ki-Byung, Kim, Young-Dong, Lee, Jungho, Cho, Kwang-Su, Park, Beom-Seok, Wing, Rod A., Yang, Tae-Jin
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group 2015
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4623524/ https://www.ncbi.nlm.nih.gov/pubmed/26506948 http://dx.doi.org/10.1038/srep15655

Ejemplares similares

Elucidating the major hidden genomic components of the A, C, and AC genomes and their influence on Brassica evolution
por: Perumal, Sampath, et al.
Publicado: (2017)

Re-exploration of U’s Triangle Brassica Species Based on Chloroplast Genomes and 45S nrDNA Sequences
por: Kim, Chang-Kug, et al.
Publicado: (2018)

A refined Panax ginseng karyotype based on an ultra-high copy 167-bp tandem repeat and ribosomal DNAs
por: Waminal, Nomar Espinosa, et al.
Publicado: (2017)

Genome and evolution of the shade‐requiring medicinal herb Panax ginseng
por: Kim, Nam‐Hoon, et al.
Publicado: (2018)

Rapid and Efficient FISH using Pre-Labeled Oligomer Probes
por: Waminal, Nomar Espinosa, et al.
Publicado: (2018)

Rapid amplification of four retrotransposon families promoted speciation and genome size expansion in the genus Panax
por: Lee, Junki, et al.
Publicado: (2017)

Transcriptome sequencing of two parental lines of cabbage (Brassica oleracea L. var. capitata L.) and construction of an EST-based genetic map
por: Izzah, Nur Kholilatul, et al.
Publicado: (2014)

Comprehensive analysis of Panax ginseng root transcriptomes
por: Jayakodi, Murukarthick, et al.
Publicado: (2015)

Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage
por: Lee, Jonghoon, et al.
Publicado: (2015)

Comprehensive comparative analysis of chloroplast genomes from seven Panax species and development of an authentication system based on species-unique single nucleotide polymorphism markers
por: Nguyen, Van Binh, et al.
Publicado: (2020)

Ginseng Genome Database: an open-access platform for genomics of Panax ginseng
por: Jayakodi, Murukarthick, et al.
Publicado: (2018)

Transcriptome profiling and comparative analysis of Panax ginseng adventitious roots
por: Jayakodi, Murukarthick, et al.
Publicado: (2014)

BrassicaTED - a public database for utilization of miniature transposable elements in Brassica species
por: Murukarthick, Jayakodi, et al.
Publicado: (2014)

Genome-Wide Comparative Analysis of 20 Miniature Inverted-Repeat Transposable Element Families in Brassica rapa and B. oleracea
por: Sampath, Perumal, et al.
Publicado: (2014)

Genetic diversity among cultivated and wild Panax ginseng populations revealed by high-resolution microsatellite markers
por: Jang, Woojong, et al.
Publicado: (2020)

Dynamic Chloroplast Genome Rearrangement and DNA Barcoding for Three Apiaceae Species Known as the Medicinal Herb “Bang-Poong”
por: Lee, Hyun Oh, et al.
Publicado: (2019)

Comprehensive Survey of Genetic Diversity in Chloroplast Genomes and 45S nrDNAs within Panax ginseng Species
por: Kim, Kyunghee, et al.
Publicado: (2015)

Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing
por: Park, Doori, et al.
Publicado: (2015)

Inheritance of chloroplast and mitochondrial genomes in cucumber revealed by four reciprocal F(1) hybrid combinations
por: Park, Hyun-Seung, et al.
Publicado: (2021)

Genome structure and diversity among Cynanchum wilfordii accessions
por: Lee, Sae Hyun, et al.
Publicado: (2022)

Characterization of a new high copy Stowaway family MITE, BRAMI-1 in Brassica genome
por: Sampath, Perumal, et al.
Publicado: (2013)

The complete chloroplast genome sequence of Indian barnyard millet, Echinochloa frumentacea (Poaceae)
por: Perumal, Sampath, et al.
Publicado: (2016)

Genotyping-by-sequencing map permits identification of clubroot resistance QTLs and revision of the reference genome assembly in cabbage (Brassica oleracea L.)
por: Lee, Jonghoon, et al.
Publicado: (2016)

Randomly Detected Genetically Modified (GM) Maize (Zea mays L.) near a Transport Route Revealed a Fragile 45S rDNA Phenotype
por: Waminal, Nomar Espinosa, et al.
Publicado: (2013)

Admixture of divergent genomes facilitates hybridization across species in the family Brassicaceae
por: Shin, Hosub, et al.
Publicado: (2022)

Integrated Transcriptomic and Metabolomic Analysis of Five Panax ginseng Cultivars Reveals the Dynamics of Ginsenoside Biosynthesis
por: Lee, Yun Sun, et al.
Publicado: (2017)

Construction of an Onion (Allium cepa L.) Genetic Linkage Map Using Genotyping-by-Sequencing Analysis with a Reference Gene Set and Identification of QTLs Controlling Anthocyanin Synthesis and Content
por: Choi, Yousoo, et al.
Publicado: (2020)

Mitochondrial plastid DNA can cause DNA barcoding paradox in plants
por: Park, Hyun-Seung, et al.
Publicado: (2020)

Author Correction: Mitochondrial plastid DNA can cause DNA barcoding paradox in plants
por: Park, Hyun-Seung, et al.
Publicado: (2021)

Comparative analysis of the transcriptomes and primary metabolite profiles of adventitious roots of five Panax ginseng cultivars
por: Lee, Yun Sun, et al.
Publicado: (2017)

Identification of candidate UDP-glycosyltransferases involved in protopanaxadiol-type ginsenoside biosynthesis in Panax ginseng
por: Kang, Kyo Bin, et al.
Publicado: (2018)

Current status of ultrasonography of the finger
por: Lee, Seun Ah, et al.
Publicado: (2016)

Draft Genome Sequence of an Endophytic Fungus, Gaeumannomyces sp. Strain JS-464, Isolated from a Reed Plant, Phragmites communis
por: Kim, Jung A., et al.
Publicado: (2017)

Karyotype analysis of Panax ginseng C.A.Meyer, 1843 (Araliaceae) based on rDNA loci and DAPI band distribution
por: Waminal, Nomar Espinosa, et al.
Publicado: (2012)

Defining the genome structure of `Tongil' rice, an important cultivar in the Korean "Green Revolution"
por: Kim, Backki, et al.
Publicado: (2014)

Factors affecting treatment outcomes in patients with oral lichen planus lesions: a retrospective study of 113 cases
por: Park, Shin-Young, et al.
Publicado: (2018)

Erratum: Text in Figure 1A. Factors affecting treatment outcomes in patients with oral lichen planus lesions: a retrospective study of 113 cases
por: Park, Shin-Young, et al.
Publicado: (2019)

The complete chloroplast genome of Korean popular Citrus hybrid Hallabong mandarin [(Citrus unshiu×C. sinensis)×C. reticulate] (Rutaceae)
por: Yang, Kiwoung, et al.
Publicado: (2016)

Dynamic evolution of Panax species
por: Shim, Hyeonah, et al.
Publicado: (2021)

Evidence-Based Guidelines for Empirical Therapy of Neutropenic Fever in Korea
por: Lee, Dong-Gun, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_v458guvasclc37hf79hccj775s