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Gene microarray analyses for potential biomarkers of single and recurrent venous thromboembolism

Venous thromboembolism is a major cause of morbidity and mortality with a high recurrence rate. The present study aimed to explore the molecular mechanisms and potential biomarkers of single venous thromboembolism (SVTE) and recurrent venous thromboembolism (RVTE). The microarray dataset GSE19151 wa...

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Autores principales: ZHOU, WUGANG, ZHANG, KE, CHEN, DONGRUI, GAO, PINGJIN, WANG, QIAO
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4626143/
https://www.ncbi.nlm.nih.gov/pubmed/26397997
http://dx.doi.org/10.3892/mmr.2015.4349
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author ZHOU, WUGANG
ZHANG, KE
CHEN, DONGRUI
GAO, PINGJIN
WANG, QIAO
author_facet ZHOU, WUGANG
ZHANG, KE
CHEN, DONGRUI
GAO, PINGJIN
WANG, QIAO
author_sort ZHOU, WUGANG
collection PubMed
description Venous thromboembolism is a major cause of morbidity and mortality with a high recurrence rate. The present study aimed to explore the molecular mechanisms and potential biomarkers of single venous thromboembolism (SVTE) and recurrent venous thromboembolism (RVTE). The microarray dataset GSE19151 was downloaded from Gene Expression Omnibus, which contained data from whole blood samples from 63 healthy controls, 32 SVTE and 38 RVTE patients. Differentially expressed genes (DEGs) in the SVTE and RVTE groups compared with those in the controls were identified using the t-test, followed by clustering analysis of DEGs and samples. Functional and pathway enrichment analyses were performed for DEGs in patients with RVTE and SVTE, as well as specific DEGs in patients with RVTE. The identified 42 DEGs in RVTE were mainly enriched in biological processes of cellular protein metabolism, gene expression and translational elongation as well as in pathways associated with ribosomes, Parkinson's disease and oxidative phosphorylation. In SVTE, 20 DEGs were identified, which were mainly involved in biological processes of biopolymer biosynthesis, translational elongation and cellular protein metabolism as well as pathways associated with ribosomes and cardiac muscle contraction. In RVTE, 22 specific DEGs were mainly involved in translational elongation, negative regulation of the force of heart contraction by chemical signals, cell proliferation, ribosomal pathways and protein export. The identified DEGs of SVTE, including COX7C and UQCRQ, may be potential biomarkers for SVTE, and the specific DEGs of RVTE, including ADRBK1, NDUFA5 and ATP5O, may be potential biomarkers for RVTE.
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spelling pubmed-46261432016-02-23 Gene microarray analyses for potential biomarkers of single and recurrent venous thromboembolism ZHOU, WUGANG ZHANG, KE CHEN, DONGRUI GAO, PINGJIN WANG, QIAO Mol Med Rep Articles Venous thromboembolism is a major cause of morbidity and mortality with a high recurrence rate. The present study aimed to explore the molecular mechanisms and potential biomarkers of single venous thromboembolism (SVTE) and recurrent venous thromboembolism (RVTE). The microarray dataset GSE19151 was downloaded from Gene Expression Omnibus, which contained data from whole blood samples from 63 healthy controls, 32 SVTE and 38 RVTE patients. Differentially expressed genes (DEGs) in the SVTE and RVTE groups compared with those in the controls were identified using the t-test, followed by clustering analysis of DEGs and samples. Functional and pathway enrichment analyses were performed for DEGs in patients with RVTE and SVTE, as well as specific DEGs in patients with RVTE. The identified 42 DEGs in RVTE were mainly enriched in biological processes of cellular protein metabolism, gene expression and translational elongation as well as in pathways associated with ribosomes, Parkinson's disease and oxidative phosphorylation. In SVTE, 20 DEGs were identified, which were mainly involved in biological processes of biopolymer biosynthesis, translational elongation and cellular protein metabolism as well as pathways associated with ribosomes and cardiac muscle contraction. In RVTE, 22 specific DEGs were mainly involved in translational elongation, negative regulation of the force of heart contraction by chemical signals, cell proliferation, ribosomal pathways and protein export. The identified DEGs of SVTE, including COX7C and UQCRQ, may be potential biomarkers for SVTE, and the specific DEGs of RVTE, including ADRBK1, NDUFA5 and ATP5O, may be potential biomarkers for RVTE. D.A. Spandidos 2015-11 2015-09-22 /pmc/articles/PMC4626143/ /pubmed/26397997 http://dx.doi.org/10.3892/mmr.2015.4349 Text en Copyright: © Zhou et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
ZHOU, WUGANG
ZHANG, KE
CHEN, DONGRUI
GAO, PINGJIN
WANG, QIAO
Gene microarray analyses for potential biomarkers of single and recurrent venous thromboembolism
title Gene microarray analyses for potential biomarkers of single and recurrent venous thromboembolism
title_full Gene microarray analyses for potential biomarkers of single and recurrent venous thromboembolism
title_fullStr Gene microarray analyses for potential biomarkers of single and recurrent venous thromboembolism
title_full_unstemmed Gene microarray analyses for potential biomarkers of single and recurrent venous thromboembolism
title_short Gene microarray analyses for potential biomarkers of single and recurrent venous thromboembolism
title_sort gene microarray analyses for potential biomarkers of single and recurrent venous thromboembolism
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4626143/
https://www.ncbi.nlm.nih.gov/pubmed/26397997
http://dx.doi.org/10.3892/mmr.2015.4349
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