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Influence of Texture and Colour in Breast TMA Classification

Breast cancer diagnosis is still done by observation of biopsies under the microscope. The development of automated methods for breast TMA classification would reduce diagnostic time. This paper is a step towards the solution for this problem and shows a complete study of breast TMA classification b...

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Autores principales: Fernández-Carrobles, M. Milagro, Bueno, Gloria, Déniz, Oscar, Salido, Jesús, García-Rojo, Marcial, González-López, Lucía
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4626403/
https://www.ncbi.nlm.nih.gov/pubmed/26513238
http://dx.doi.org/10.1371/journal.pone.0141556
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author Fernández-Carrobles, M. Milagro
Bueno, Gloria
Déniz, Oscar
Salido, Jesús
García-Rojo, Marcial
González-López, Lucía
author_facet Fernández-Carrobles, M. Milagro
Bueno, Gloria
Déniz, Oscar
Salido, Jesús
García-Rojo, Marcial
González-López, Lucía
author_sort Fernández-Carrobles, M. Milagro
collection PubMed
description Breast cancer diagnosis is still done by observation of biopsies under the microscope. The development of automated methods for breast TMA classification would reduce diagnostic time. This paper is a step towards the solution for this problem and shows a complete study of breast TMA classification based on colour models and texture descriptors. The TMA images were divided into four classes: i) benign stromal tissue with cellularity, ii) adipose tissue, iii) benign and benign anomalous structures, and iv) ductal and lobular carcinomas. A relevant set of features was obtained on eight different colour models from first and second order Haralick statistical descriptors obtained from the intensity image, Fourier, Wavelets, Multiresolution Gabor, M-LBP and textons descriptors. Furthermore, four types of classification experiments were performed using six different classifiers: (1) classification per colour model individually, (2) classification by combination of colour models, (3) classification by combination of colour models and descriptors, and (4) classification by combination of colour models and descriptors with a previous feature set reduction. The best result shows an average of 99.05% accuracy and 98.34% positive predictive value. These results have been obtained by means of a bagging tree classifier with combination of six colour models and the use of 1719 non-correlated (correlation threshold of 97%) textural features based on Statistical, M-LBP, Gabor and Spatial textons descriptors.
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spelling pubmed-46264032015-11-06 Influence of Texture and Colour in Breast TMA Classification Fernández-Carrobles, M. Milagro Bueno, Gloria Déniz, Oscar Salido, Jesús García-Rojo, Marcial González-López, Lucía PLoS One Research Article Breast cancer diagnosis is still done by observation of biopsies under the microscope. The development of automated methods for breast TMA classification would reduce diagnostic time. This paper is a step towards the solution for this problem and shows a complete study of breast TMA classification based on colour models and texture descriptors. The TMA images were divided into four classes: i) benign stromal tissue with cellularity, ii) adipose tissue, iii) benign and benign anomalous structures, and iv) ductal and lobular carcinomas. A relevant set of features was obtained on eight different colour models from first and second order Haralick statistical descriptors obtained from the intensity image, Fourier, Wavelets, Multiresolution Gabor, M-LBP and textons descriptors. Furthermore, four types of classification experiments were performed using six different classifiers: (1) classification per colour model individually, (2) classification by combination of colour models, (3) classification by combination of colour models and descriptors, and (4) classification by combination of colour models and descriptors with a previous feature set reduction. The best result shows an average of 99.05% accuracy and 98.34% positive predictive value. These results have been obtained by means of a bagging tree classifier with combination of six colour models and the use of 1719 non-correlated (correlation threshold of 97%) textural features based on Statistical, M-LBP, Gabor and Spatial textons descriptors. Public Library of Science 2015-10-29 /pmc/articles/PMC4626403/ /pubmed/26513238 http://dx.doi.org/10.1371/journal.pone.0141556 Text en © 2015 Fernández-Carrobles et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Fernández-Carrobles, M. Milagro
Bueno, Gloria
Déniz, Oscar
Salido, Jesús
García-Rojo, Marcial
González-López, Lucía
Influence of Texture and Colour in Breast TMA Classification
title Influence of Texture and Colour in Breast TMA Classification
title_full Influence of Texture and Colour in Breast TMA Classification
title_fullStr Influence of Texture and Colour in Breast TMA Classification
title_full_unstemmed Influence of Texture and Colour in Breast TMA Classification
title_short Influence of Texture and Colour in Breast TMA Classification
title_sort influence of texture and colour in breast tma classification
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4626403/
https://www.ncbi.nlm.nih.gov/pubmed/26513238
http://dx.doi.org/10.1371/journal.pone.0141556
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