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Influence of Texture and Colour in Breast TMA Classification
Breast cancer diagnosis is still done by observation of biopsies under the microscope. The development of automated methods for breast TMA classification would reduce diagnostic time. This paper is a step towards the solution for this problem and shows a complete study of breast TMA classification b...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4626403/ https://www.ncbi.nlm.nih.gov/pubmed/26513238 http://dx.doi.org/10.1371/journal.pone.0141556 |
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author | Fernández-Carrobles, M. Milagro Bueno, Gloria Déniz, Oscar Salido, Jesús García-Rojo, Marcial González-López, Lucía |
author_facet | Fernández-Carrobles, M. Milagro Bueno, Gloria Déniz, Oscar Salido, Jesús García-Rojo, Marcial González-López, Lucía |
author_sort | Fernández-Carrobles, M. Milagro |
collection | PubMed |
description | Breast cancer diagnosis is still done by observation of biopsies under the microscope. The development of automated methods for breast TMA classification would reduce diagnostic time. This paper is a step towards the solution for this problem and shows a complete study of breast TMA classification based on colour models and texture descriptors. The TMA images were divided into four classes: i) benign stromal tissue with cellularity, ii) adipose tissue, iii) benign and benign anomalous structures, and iv) ductal and lobular carcinomas. A relevant set of features was obtained on eight different colour models from first and second order Haralick statistical descriptors obtained from the intensity image, Fourier, Wavelets, Multiresolution Gabor, M-LBP and textons descriptors. Furthermore, four types of classification experiments were performed using six different classifiers: (1) classification per colour model individually, (2) classification by combination of colour models, (3) classification by combination of colour models and descriptors, and (4) classification by combination of colour models and descriptors with a previous feature set reduction. The best result shows an average of 99.05% accuracy and 98.34% positive predictive value. These results have been obtained by means of a bagging tree classifier with combination of six colour models and the use of 1719 non-correlated (correlation threshold of 97%) textural features based on Statistical, M-LBP, Gabor and Spatial textons descriptors. |
format | Online Article Text |
id | pubmed-4626403 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-46264032015-11-06 Influence of Texture and Colour in Breast TMA Classification Fernández-Carrobles, M. Milagro Bueno, Gloria Déniz, Oscar Salido, Jesús García-Rojo, Marcial González-López, Lucía PLoS One Research Article Breast cancer diagnosis is still done by observation of biopsies under the microscope. The development of automated methods for breast TMA classification would reduce diagnostic time. This paper is a step towards the solution for this problem and shows a complete study of breast TMA classification based on colour models and texture descriptors. The TMA images were divided into four classes: i) benign stromal tissue with cellularity, ii) adipose tissue, iii) benign and benign anomalous structures, and iv) ductal and lobular carcinomas. A relevant set of features was obtained on eight different colour models from first and second order Haralick statistical descriptors obtained from the intensity image, Fourier, Wavelets, Multiresolution Gabor, M-LBP and textons descriptors. Furthermore, four types of classification experiments were performed using six different classifiers: (1) classification per colour model individually, (2) classification by combination of colour models, (3) classification by combination of colour models and descriptors, and (4) classification by combination of colour models and descriptors with a previous feature set reduction. The best result shows an average of 99.05% accuracy and 98.34% positive predictive value. These results have been obtained by means of a bagging tree classifier with combination of six colour models and the use of 1719 non-correlated (correlation threshold of 97%) textural features based on Statistical, M-LBP, Gabor and Spatial textons descriptors. Public Library of Science 2015-10-29 /pmc/articles/PMC4626403/ /pubmed/26513238 http://dx.doi.org/10.1371/journal.pone.0141556 Text en © 2015 Fernández-Carrobles et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Fernández-Carrobles, M. Milagro Bueno, Gloria Déniz, Oscar Salido, Jesús García-Rojo, Marcial González-López, Lucía Influence of Texture and Colour in Breast TMA Classification |
title | Influence of Texture and Colour in Breast TMA Classification |
title_full | Influence of Texture and Colour in Breast TMA Classification |
title_fullStr | Influence of Texture and Colour in Breast TMA Classification |
title_full_unstemmed | Influence of Texture and Colour in Breast TMA Classification |
title_short | Influence of Texture and Colour in Breast TMA Classification |
title_sort | influence of texture and colour in breast tma classification |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4626403/ https://www.ncbi.nlm.nih.gov/pubmed/26513238 http://dx.doi.org/10.1371/journal.pone.0141556 |
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