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Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut
Oceanobacillus picturae is a strain of a moderately halophilic bacterium, first isolated from a mural painting. We demonstrate, for the first time, the culture of human Oceanobacillus picturae, strain S1(T), whose genome is described here, from a stool sample collected from a 25-year-old Saoudian he...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4627390/ https://www.ncbi.nlm.nih.gov/pubmed/26523201 http://dx.doi.org/10.1186/s40793-015-0081-2 |
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author | Lagier, Jean-Christophe Khelaifia, Saber Azhar, Esam Ibraheem Croce, Olivier Bibi, Fehmida Jiman-Fatani, Asif Ahmad Yasir, Muhammad Helaby, Huda Ben Robert, Catherine Fournier, Pierre-Edouard Raoult, Didier |
author_facet | Lagier, Jean-Christophe Khelaifia, Saber Azhar, Esam Ibraheem Croce, Olivier Bibi, Fehmida Jiman-Fatani, Asif Ahmad Yasir, Muhammad Helaby, Huda Ben Robert, Catherine Fournier, Pierre-Edouard Raoult, Didier |
author_sort | Lagier, Jean-Christophe |
collection | PubMed |
description | Oceanobacillus picturae is a strain of a moderately halophilic bacterium, first isolated from a mural painting. We demonstrate, for the first time, the culture of human Oceanobacillus picturae, strain S1(T), whose genome is described here, from a stool sample collected from a 25-year-old Saoudian healthy individual. We used a slightly modified standard culture medium adding 100 g/L of NaCl. We provide a short description of this strain including its MALDI-TOF spectrum, the main identification tool currently used in clinical microbiology. The 3,675,175 bp long genome exhibits a G + C content of 39.15 % and contains 3666 protein-coding and 157 RNA genes. The draft genome sequence of Oceanobacillus picturae has a similar size to the Oceanobacillus kimchii (respectively 3.67 Mb versus 3.83 Mb). The G + C content was higher compared with Oceanobacillus kimchii (respectively 39.15 % and 35.2 %). Oceanobacillus picturae shared almost identical number of genes (3823 genes versus 3879 genes), with a similar ratio of genes per Mb (1041 genes/Mb versus 1012 genes/Mb). The genome sequencing of Oceanobacillus picturae strain S1 isolated for the first time in a human, will be added to the 778 genome projects from the gastrointestinal tract listed by the international consortium Human Microbiome Project. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0081-2) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4627390 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-46273902015-10-31 Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut Lagier, Jean-Christophe Khelaifia, Saber Azhar, Esam Ibraheem Croce, Olivier Bibi, Fehmida Jiman-Fatani, Asif Ahmad Yasir, Muhammad Helaby, Huda Ben Robert, Catherine Fournier, Pierre-Edouard Raoult, Didier Stand Genomic Sci Short Genome Report Oceanobacillus picturae is a strain of a moderately halophilic bacterium, first isolated from a mural painting. We demonstrate, for the first time, the culture of human Oceanobacillus picturae, strain S1(T), whose genome is described here, from a stool sample collected from a 25-year-old Saoudian healthy individual. We used a slightly modified standard culture medium adding 100 g/L of NaCl. We provide a short description of this strain including its MALDI-TOF spectrum, the main identification tool currently used in clinical microbiology. The 3,675,175 bp long genome exhibits a G + C content of 39.15 % and contains 3666 protein-coding and 157 RNA genes. The draft genome sequence of Oceanobacillus picturae has a similar size to the Oceanobacillus kimchii (respectively 3.67 Mb versus 3.83 Mb). The G + C content was higher compared with Oceanobacillus kimchii (respectively 39.15 % and 35.2 %). Oceanobacillus picturae shared almost identical number of genes (3823 genes versus 3879 genes), with a similar ratio of genes per Mb (1041 genes/Mb versus 1012 genes/Mb). The genome sequencing of Oceanobacillus picturae strain S1 isolated for the first time in a human, will be added to the 778 genome projects from the gastrointestinal tract listed by the international consortium Human Microbiome Project. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0081-2) contains supplementary material, which is available to authorized users. BioMed Central 2015-10-29 /pmc/articles/PMC4627390/ /pubmed/26523201 http://dx.doi.org/10.1186/s40793-015-0081-2 Text en © Lagier et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Lagier, Jean-Christophe Khelaifia, Saber Azhar, Esam Ibraheem Croce, Olivier Bibi, Fehmida Jiman-Fatani, Asif Ahmad Yasir, Muhammad Helaby, Huda Ben Robert, Catherine Fournier, Pierre-Edouard Raoult, Didier Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut |
title | Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut |
title_full | Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut |
title_fullStr | Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut |
title_full_unstemmed | Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut |
title_short | Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut |
title_sort | genome sequence of oceanobacillus picturae strain s1, an halophilic bacterium first isolated in human gut |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4627390/ https://www.ncbi.nlm.nih.gov/pubmed/26523201 http://dx.doi.org/10.1186/s40793-015-0081-2 |
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