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Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut

Oceanobacillus picturae is a strain of a moderately halophilic bacterium, first isolated from a mural painting. We demonstrate, for the first time, the culture of human Oceanobacillus picturae, strain S1(T), whose genome is described here, from a stool sample collected from a 25-year-old Saoudian he...

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Autores principales: Lagier, Jean-Christophe, Khelaifia, Saber, Azhar, Esam Ibraheem, Croce, Olivier, Bibi, Fehmida, Jiman-Fatani, Asif Ahmad, Yasir, Muhammad, Helaby, Huda Ben, Robert, Catherine, Fournier, Pierre-Edouard, Raoult, Didier
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4627390/
https://www.ncbi.nlm.nih.gov/pubmed/26523201
http://dx.doi.org/10.1186/s40793-015-0081-2
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author Lagier, Jean-Christophe
Khelaifia, Saber
Azhar, Esam Ibraheem
Croce, Olivier
Bibi, Fehmida
Jiman-Fatani, Asif Ahmad
Yasir, Muhammad
Helaby, Huda Ben
Robert, Catherine
Fournier, Pierre-Edouard
Raoult, Didier
author_facet Lagier, Jean-Christophe
Khelaifia, Saber
Azhar, Esam Ibraheem
Croce, Olivier
Bibi, Fehmida
Jiman-Fatani, Asif Ahmad
Yasir, Muhammad
Helaby, Huda Ben
Robert, Catherine
Fournier, Pierre-Edouard
Raoult, Didier
author_sort Lagier, Jean-Christophe
collection PubMed
description Oceanobacillus picturae is a strain of a moderately halophilic bacterium, first isolated from a mural painting. We demonstrate, for the first time, the culture of human Oceanobacillus picturae, strain S1(T), whose genome is described here, from a stool sample collected from a 25-year-old Saoudian healthy individual. We used a slightly modified standard culture medium adding 100 g/L of NaCl. We provide a short description of this strain including its MALDI-TOF spectrum, the main identification tool currently used in clinical microbiology. The 3,675,175 bp long genome exhibits a G + C content of 39.15 % and contains 3666 protein-coding and 157 RNA genes. The draft genome sequence of Oceanobacillus picturae has a similar size to the Oceanobacillus kimchii (respectively 3.67 Mb versus 3.83 Mb). The G + C content was higher compared with Oceanobacillus kimchii (respectively 39.15 % and 35.2 %). Oceanobacillus picturae shared almost identical number of genes (3823 genes versus 3879 genes), with a similar ratio of genes per Mb (1041 genes/Mb versus 1012 genes/Mb). The genome sequencing of Oceanobacillus picturae strain S1 isolated for the first time in a human, will be added to the 778 genome projects from the gastrointestinal tract listed by the international consortium Human Microbiome Project. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0081-2) contains supplementary material, which is available to authorized users.
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spelling pubmed-46273902015-10-31 Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut Lagier, Jean-Christophe Khelaifia, Saber Azhar, Esam Ibraheem Croce, Olivier Bibi, Fehmida Jiman-Fatani, Asif Ahmad Yasir, Muhammad Helaby, Huda Ben Robert, Catherine Fournier, Pierre-Edouard Raoult, Didier Stand Genomic Sci Short Genome Report Oceanobacillus picturae is a strain of a moderately halophilic bacterium, first isolated from a mural painting. We demonstrate, for the first time, the culture of human Oceanobacillus picturae, strain S1(T), whose genome is described here, from a stool sample collected from a 25-year-old Saoudian healthy individual. We used a slightly modified standard culture medium adding 100 g/L of NaCl. We provide a short description of this strain including its MALDI-TOF spectrum, the main identification tool currently used in clinical microbiology. The 3,675,175 bp long genome exhibits a G + C content of 39.15 % and contains 3666 protein-coding and 157 RNA genes. The draft genome sequence of Oceanobacillus picturae has a similar size to the Oceanobacillus kimchii (respectively 3.67 Mb versus 3.83 Mb). The G + C content was higher compared with Oceanobacillus kimchii (respectively 39.15 % and 35.2 %). Oceanobacillus picturae shared almost identical number of genes (3823 genes versus 3879 genes), with a similar ratio of genes per Mb (1041 genes/Mb versus 1012 genes/Mb). The genome sequencing of Oceanobacillus picturae strain S1 isolated for the first time in a human, will be added to the 778 genome projects from the gastrointestinal tract listed by the international consortium Human Microbiome Project. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0081-2) contains supplementary material, which is available to authorized users. BioMed Central 2015-10-29 /pmc/articles/PMC4627390/ /pubmed/26523201 http://dx.doi.org/10.1186/s40793-015-0081-2 Text en © Lagier et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Lagier, Jean-Christophe
Khelaifia, Saber
Azhar, Esam Ibraheem
Croce, Olivier
Bibi, Fehmida
Jiman-Fatani, Asif Ahmad
Yasir, Muhammad
Helaby, Huda Ben
Robert, Catherine
Fournier, Pierre-Edouard
Raoult, Didier
Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut
title Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut
title_full Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut
title_fullStr Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut
title_full_unstemmed Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut
title_short Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut
title_sort genome sequence of oceanobacillus picturae strain s1, an halophilic bacterium first isolated in human gut
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4627390/
https://www.ncbi.nlm.nih.gov/pubmed/26523201
http://dx.doi.org/10.1186/s40793-015-0081-2
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