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Practical considerations in genomic decision support: The eMERGE experience

BACKGROUND: Genomic medicine has the potential to improve care by tailoring treatments to the individual. There is consensus in the literature that pharmacogenomics (PGx) may be an ideal starting point for real-world implementation, due to the presence of well-characterized drug-gene interactions. C...

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Autores principales: Herr, Timothy M., Bielinski, Suzette J., Bottinger, Erwin, Brautbar, Ariel, Brilliant, Murray, Chute, Christopher G., Cobb, Beth L., Denny, Joshua C., Hakonarson, Hakon, Hartzler, Andrea L., Hripcsak, George, Kannry, Joseph, Kohane, Isaac S., Kullo, Iftikhar J., Lin, Simon, Manzi, Shannon, Marsolo, Keith, Overby, Casey Lynnette, Pathak, Jyotishman, Peissig, Peggy, Pulley, Jill, Ralston, James, Rasmussen, Luke, Roden, Dan M., Tromp, Gerard, Uphoff, Timothy, Weng, Chunhua, Wolf, Wendy, Williams, Marc S., Starren, Justin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Medknow Publications & Media Pvt Ltd 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4629307/
https://www.ncbi.nlm.nih.gov/pubmed/26605115
http://dx.doi.org/10.4103/2153-3539.165999
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author Herr, Timothy M.
Bielinski, Suzette J.
Bottinger, Erwin
Brautbar, Ariel
Brilliant, Murray
Chute, Christopher G.
Cobb, Beth L.
Denny, Joshua C.
Hakonarson, Hakon
Hartzler, Andrea L.
Hripcsak, George
Kannry, Joseph
Kohane, Isaac S.
Kullo, Iftikhar J.
Lin, Simon
Manzi, Shannon
Marsolo, Keith
Overby, Casey Lynnette
Pathak, Jyotishman
Peissig, Peggy
Pulley, Jill
Ralston, James
Rasmussen, Luke
Roden, Dan M.
Tromp, Gerard
Uphoff, Timothy
Weng, Chunhua
Wolf, Wendy
Williams, Marc S.
Starren, Justin
author_facet Herr, Timothy M.
Bielinski, Suzette J.
Bottinger, Erwin
Brautbar, Ariel
Brilliant, Murray
Chute, Christopher G.
Cobb, Beth L.
Denny, Joshua C.
Hakonarson, Hakon
Hartzler, Andrea L.
Hripcsak, George
Kannry, Joseph
Kohane, Isaac S.
Kullo, Iftikhar J.
Lin, Simon
Manzi, Shannon
Marsolo, Keith
Overby, Casey Lynnette
Pathak, Jyotishman
Peissig, Peggy
Pulley, Jill
Ralston, James
Rasmussen, Luke
Roden, Dan M.
Tromp, Gerard
Uphoff, Timothy
Weng, Chunhua
Wolf, Wendy
Williams, Marc S.
Starren, Justin
author_sort Herr, Timothy M.
collection PubMed
description BACKGROUND: Genomic medicine has the potential to improve care by tailoring treatments to the individual. There is consensus in the literature that pharmacogenomics (PGx) may be an ideal starting point for real-world implementation, due to the presence of well-characterized drug-gene interactions. Clinical Decision Support (CDS) is an ideal avenue by which to implement PGx at the bedside. Previous literature has established theoretical models for PGx CDS implementation and discussed a number of anticipated real-world challenges. However, work detailing actual PGx CDS implementation experiences has been limited. Anticipated challenges include data storage and management, system integration, physician acceptance, and more. METHODS: In this study, we analyzed the experiences of ten members of the Electronic Medical Records and Genomics (eMERGE) Network, and one affiliate, in their attempts to implement PGx CDS. We examined the resulting PGx CDS system characteristics and conducted a survey to understand the unanticipated implementation challenges sites encountered. RESULTS: Ten sites have successfully implemented at least one PGx CDS rule in the clinical setting. The majority of sites elected to create an Omic Ancillary System (OAS) to manage genetic and genomic data. All sites were able to adapt their existing CDS tools for PGx knowledge. The most common and impactful delays were not PGx-specific issues. Instead, they were general IT implementation problems, with top challenges including team coordination/communication and staffing. The challenges encountered caused a median total delay in system go-live of approximately two months. CONCLUSIONS: These results suggest that barriers to PGx CDS implementations are generally surmountable. Moreover, PGx CDS implementation may not be any more difficult than other healthcare IT projects of similar scope, as the most significant delays encountered were not unique to genomic medicine. These are encouraging results for any institution considering implementing a PGx CDS tool, and for the advancement of genomic medicine.
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spelling pubmed-46293072015-11-24 Practical considerations in genomic decision support: The eMERGE experience Herr, Timothy M. Bielinski, Suzette J. Bottinger, Erwin Brautbar, Ariel Brilliant, Murray Chute, Christopher G. Cobb, Beth L. Denny, Joshua C. Hakonarson, Hakon Hartzler, Andrea L. Hripcsak, George Kannry, Joseph Kohane, Isaac S. Kullo, Iftikhar J. Lin, Simon Manzi, Shannon Marsolo, Keith Overby, Casey Lynnette Pathak, Jyotishman Peissig, Peggy Pulley, Jill Ralston, James Rasmussen, Luke Roden, Dan M. Tromp, Gerard Uphoff, Timothy Weng, Chunhua Wolf, Wendy Williams, Marc S. Starren, Justin J Pathol Inform Research Article BACKGROUND: Genomic medicine has the potential to improve care by tailoring treatments to the individual. There is consensus in the literature that pharmacogenomics (PGx) may be an ideal starting point for real-world implementation, due to the presence of well-characterized drug-gene interactions. Clinical Decision Support (CDS) is an ideal avenue by which to implement PGx at the bedside. Previous literature has established theoretical models for PGx CDS implementation and discussed a number of anticipated real-world challenges. However, work detailing actual PGx CDS implementation experiences has been limited. Anticipated challenges include data storage and management, system integration, physician acceptance, and more. METHODS: In this study, we analyzed the experiences of ten members of the Electronic Medical Records and Genomics (eMERGE) Network, and one affiliate, in their attempts to implement PGx CDS. We examined the resulting PGx CDS system characteristics and conducted a survey to understand the unanticipated implementation challenges sites encountered. RESULTS: Ten sites have successfully implemented at least one PGx CDS rule in the clinical setting. The majority of sites elected to create an Omic Ancillary System (OAS) to manage genetic and genomic data. All sites were able to adapt their existing CDS tools for PGx knowledge. The most common and impactful delays were not PGx-specific issues. Instead, they were general IT implementation problems, with top challenges including team coordination/communication and staffing. The challenges encountered caused a median total delay in system go-live of approximately two months. CONCLUSIONS: These results suggest that barriers to PGx CDS implementations are generally surmountable. Moreover, PGx CDS implementation may not be any more difficult than other healthcare IT projects of similar scope, as the most significant delays encountered were not unique to genomic medicine. These are encouraging results for any institution considering implementing a PGx CDS tool, and for the advancement of genomic medicine. Medknow Publications & Media Pvt Ltd 2015-09-28 /pmc/articles/PMC4629307/ /pubmed/26605115 http://dx.doi.org/10.4103/2153-3539.165999 Text en Copyright: © 2015 Journal of Pathology Informatics http://creativecommons.org/licenses/by-nc-sa/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 3.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as the author is credited and the new creations are licensed under the identical terms.
spellingShingle Research Article
Herr, Timothy M.
Bielinski, Suzette J.
Bottinger, Erwin
Brautbar, Ariel
Brilliant, Murray
Chute, Christopher G.
Cobb, Beth L.
Denny, Joshua C.
Hakonarson, Hakon
Hartzler, Andrea L.
Hripcsak, George
Kannry, Joseph
Kohane, Isaac S.
Kullo, Iftikhar J.
Lin, Simon
Manzi, Shannon
Marsolo, Keith
Overby, Casey Lynnette
Pathak, Jyotishman
Peissig, Peggy
Pulley, Jill
Ralston, James
Rasmussen, Luke
Roden, Dan M.
Tromp, Gerard
Uphoff, Timothy
Weng, Chunhua
Wolf, Wendy
Williams, Marc S.
Starren, Justin
Practical considerations in genomic decision support: The eMERGE experience
title Practical considerations in genomic decision support: The eMERGE experience
title_full Practical considerations in genomic decision support: The eMERGE experience
title_fullStr Practical considerations in genomic decision support: The eMERGE experience
title_full_unstemmed Practical considerations in genomic decision support: The eMERGE experience
title_short Practical considerations in genomic decision support: The eMERGE experience
title_sort practical considerations in genomic decision support: the emerge experience
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4629307/
https://www.ncbi.nlm.nih.gov/pubmed/26605115
http://dx.doi.org/10.4103/2153-3539.165999
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