Cargando…

Deformable complex network for refining low-resolution X-ray structures

In macromolecular X-ray crystallography, building more accurate atomic models based on lower resolution experimental diffraction data remains a great challenge. Previous studies have used a deformable elastic network (DEN) model to aid in low-resolution structural refinement. In this study, the deve...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhang, Chong, Wang, Qinghua, Ma, Jianpeng
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	International Union of Crystallography 2015
Materias:	Research Papers
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4631475/ https://www.ncbi.nlm.nih.gov/pubmed/26527134 http://dx.doi.org/10.1107/S139900471501528X

Ejemplares similares

Application of normal-mode refinement to X-ray crystal structures at the lower resolution limit
por: Ni, Fengyun, et al.
Publicado: (2009)

Deformable elastic network refinement for low-resolution macromolecular crystallography
por: Schröder, Gunnar F., et al.
Publicado: (2014)

X-ray structure determination at low resolution
por: Brunger, Axel T., et al.
Publicado: (2009)

Recommended X-ray single-crystal structure refinement and Rietveld refinement procedure for tremolite
por: Ballirano, Paolo, et al.
Publicado: (2021)

Applying an Empirical Hydropathic Forcefield in Refinement May Improve Low-Resolution Protein X-Ray Crystal Structures
por: Koparde, Vishal N., et al.
Publicado: (2011)

xMDFF: molecular dynamics flexible fitting of low-resolution X-ray structures
por: McGreevy, Ryan, et al.
Publicado: (2014)

PDB_REDO: automated re-refinement of X-ray structure models in the PDB
por: Joosten, Robbie P., et al.
Publicado: (2009)

Automated refinement of macromolecular structures at low resolution using prior information
por: Kovalevskiy, Oleg, et al.
Publicado: (2016)

Low-resolution refinement tools in REFMAC5
por: Nicholls, Robert A., et al.
Publicado: (2012)

Accurate crystal structure of ice VI from X-ray diffraction with Hirshfeld atom refinement
por: Chodkiewicz, Michal L., et al.
Publicado: (2022)

A grid-enabled web service for low-resolution crystal structure refinement
por: O’Donovan, Daniel J., et al.
Publicado: (2012)

Subatomic resolution X-ray structures of green fluorescent protein
por: Takaba, Kiyofumi, et al.
Publicado: (2019)

Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution
por: Headd, Jeffrey J., et al.
Publicado: (2012)

Polarizable atomic multipole X-ray refinement: application to peptide crystals
por: Schnieders, Michael J., et al.
Publicado: (2009)

Model-building strategies for low-resolution X-ray crystallographic data
por: Karmali, Anjum M., et al.
Publicado: (2009)

High-resolution 3D X-ray diffraction microscopy: 3D mapping of deformed metal microstructures
por: Kutsal, Mustafacan, et al.
Publicado: (2022)

Joint X-ray/NMR structure refinement of multidomain/multisubunit systems
por: Carlon, Azzurra, et al.
Publicado: (2018)

From lows to highs: using low-resolution models to phase X-ray data
por: Stuart, David I., et al.
Publicado: (2013)

Simultaneous use of solution NMR and X-ray data in REFMAC5 for joint refinement/detection of structural differences
por: Rinaldelli, Mauro, et al.
Publicado: (2014)

Refinement of protein structures using a combination of quantum-mechanical calculations with neutron and X-ray crystallographic data
por: Caldararu, Octav, et al.
Publicado: (2019)

OPUS-X: an open-source toolkit for protein torsion angles, secondary structure, solvent accessibility, contact map predictions and 3D folding
por: Xu, Gang, et al.
Publicado: (2021)

Correction to: Joint X-ray/NMR structure refinement of multidomain/multisubunit systems
por: Carlon, Azzurra, et al.
Publicado: (2019)

Modeling the Correlation between Z and B in an X-ray Crystal Structure Refinement
por: Buscagan, Trixia M., et al.
Publicado: (2023)

Rietveld refinement of KLaTiO(4) from X-ray powder data
por: Zhu, Bai-Chuan, et al.
Publicado: (2011)

Developments in low-resolution biological X-ray crystallography
por: Dyda, Fred
Publicado: (2010)

CXR-RefineDet: Single-Shot Refinement Neural Network for Chest X-Ray Radiograph Based on Multiple Lesions Detection
por: Lin, Cong, et al.
Publicado: (2022)

High-resolution X-ray diffraction with no sample preparation
por: Hansford, G. M., et al.
Publicado: (2017)

High-Resolution X-Ray Structure of the Trimeric Scar/WAVE-Complex Precursor Brk1
por: Linkner, Joern, et al.
Publicado: (2011)

A revised partiality model and post-refinement algorithm for X-ray free-electron laser data
por: Ginn, Helen Mary, et al.
Publicado: (2015)

Rietveld refinement of AgCa(10)(PO(4))(7) from X-ray powder data
por: Strutynska, Nataliya Yu., et al.
Publicado: (2013)

A compact high-resolution X-ray powder diffractometer
por: Fewster, Paul F., et al.
Publicado: (2013)

Refinements for Bragg coherent X-ray diffraction imaging: electron backscatter diffraction alignment and strain field computation
por: Yang, David, et al.
Publicado: (2022)

Protein NMR Structures Refined with Rosetta Have Higher Accuracy Relative to Corresponding X-ray Crystal Structures
por: Mao, Binchen, et al.
Publicado: (2014)

Re-refinement from deposited X-ray data can deliver improved models for most PDB entries
por: Joosten, Robbie P., et al.
Publicado: (2009)

Laser-wakefield accelerators for high-resolution X-ray imaging of complex microstructures
por: Hussein, A. E., et al.
Publicado: (2019)

Temperature gradient analyzers for compact high-resolution X-ray spectrometers
por: Ishikawa, D., et al.
Publicado: (2009)

X-ray diffraction with micrometre spatial resolution for highly absorbing samples
por: Chakrabarti, Prerana, et al.
Publicado: (2022)

fragHAR: towards ab initio quantum-crystallographic X-ray structure refinement for polypeptides and proteins
por: Bergmann, Justin, et al.
Publicado: (2020)

Automating crystallographic structure solution and refinement of protein–ligand complexes
por: Echols, Nathaniel, et al.
Publicado: (2013)

Structure refinement of the δ(1p) phase in the Fe–Zn system by single-crystal X-ray diffraction combined with scanning transmission electron microscopy
por: Okamoto, Norihiko L., et al.
Publicado: (2014)

Cannot write session to /tmp/vufind_sessions/sess_ekjflob4m4kak6fnpom8tjoghm