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An efficient interpolation technique for jump proposals in reversible-jump Markov chain Monte Carlo calculations
Selection among alternative theoretical models given an observed dataset is an important challenge in many areas of physics and astronomy. Reversible-jump Markov chain Monte Carlo (RJMCMC) is an extremely powerful technique for performing Bayesian model selection, but it suffers from a fundamental d...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society Publishing
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4632544/ https://www.ncbi.nlm.nih.gov/pubmed/26543580 http://dx.doi.org/10.1098/rsos.150030 |
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author | Farr, W. M. Mandel, I. Stevens, D. |
author_facet | Farr, W. M. Mandel, I. Stevens, D. |
author_sort | Farr, W. M. |
collection | PubMed |
description | Selection among alternative theoretical models given an observed dataset is an important challenge in many areas of physics and astronomy. Reversible-jump Markov chain Monte Carlo (RJMCMC) is an extremely powerful technique for performing Bayesian model selection, but it suffers from a fundamental difficulty and it requires jumps between model parameter spaces, but cannot efficiently explore both parameter spaces at once. Thus, a naive jump between parameter spaces is unlikely to be accepted in the Markov chain Monte Carlo (MCMC) algorithm and convergence is correspondingly slow. Here, we demonstrate an interpolation technique that uses samples from single-model MCMCs to propose intermodel jumps from an approximation to the single-model posterior of the target parameter space. The interpolation technique, based on a kD-tree data structure, is adaptive and efficient in modest dimensionality. We show that our technique leads to improved convergence over naive jumps in an RJMCMC, and compare it to other proposals in the literature to improve the convergence of RJMCMCs. We also demonstrate the use of the same interpolation technique as a way to construct efficient ‘global’ proposal distributions for single-model MCMCs without prior knowledge of the structure of the posterior distribution, and discuss improvements that permit the method to be used in higher dimensional spaces efficiently. |
format | Online Article Text |
id | pubmed-4632544 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | The Royal Society Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-46325442015-11-05 An efficient interpolation technique for jump proposals in reversible-jump Markov chain Monte Carlo calculations Farr, W. M. Mandel, I. Stevens, D. R Soc Open Sci Astronomy Selection among alternative theoretical models given an observed dataset is an important challenge in many areas of physics and astronomy. Reversible-jump Markov chain Monte Carlo (RJMCMC) is an extremely powerful technique for performing Bayesian model selection, but it suffers from a fundamental difficulty and it requires jumps between model parameter spaces, but cannot efficiently explore both parameter spaces at once. Thus, a naive jump between parameter spaces is unlikely to be accepted in the Markov chain Monte Carlo (MCMC) algorithm and convergence is correspondingly slow. Here, we demonstrate an interpolation technique that uses samples from single-model MCMCs to propose intermodel jumps from an approximation to the single-model posterior of the target parameter space. The interpolation technique, based on a kD-tree data structure, is adaptive and efficient in modest dimensionality. We show that our technique leads to improved convergence over naive jumps in an RJMCMC, and compare it to other proposals in the literature to improve the convergence of RJMCMCs. We also demonstrate the use of the same interpolation technique as a way to construct efficient ‘global’ proposal distributions for single-model MCMCs without prior knowledge of the structure of the posterior distribution, and discuss improvements that permit the method to be used in higher dimensional spaces efficiently. The Royal Society Publishing 2015-06-24 /pmc/articles/PMC4632544/ /pubmed/26543580 http://dx.doi.org/10.1098/rsos.150030 Text en http://creativecommons.org/licenses/by/4.0/ © 2015 The Authors. Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Astronomy Farr, W. M. Mandel, I. Stevens, D. An efficient interpolation technique for jump proposals in reversible-jump Markov chain Monte Carlo calculations |
title | An efficient interpolation technique for jump proposals in reversible-jump Markov chain Monte Carlo calculations |
title_full | An efficient interpolation technique for jump proposals in reversible-jump Markov chain Monte Carlo calculations |
title_fullStr | An efficient interpolation technique for jump proposals in reversible-jump Markov chain Monte Carlo calculations |
title_full_unstemmed | An efficient interpolation technique for jump proposals in reversible-jump Markov chain Monte Carlo calculations |
title_short | An efficient interpolation technique for jump proposals in reversible-jump Markov chain Monte Carlo calculations |
title_sort | efficient interpolation technique for jump proposals in reversible-jump markov chain monte carlo calculations |
topic | Astronomy |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4632544/ https://www.ncbi.nlm.nih.gov/pubmed/26543580 http://dx.doi.org/10.1098/rsos.150030 |
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