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A method for estimating spikelet number per panicle: Integrating image analysis and a 5-point calibration model
Spikelet number per panicle (SNPP) is one of the most important yield components used to estimate rice yields. The use of high-throughput quantitative image analysis methods for understanding the diversity of the panicle has increased rapidly. However, it is difficult to simultaneously extract panic...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4635573/ https://www.ncbi.nlm.nih.gov/pubmed/26542412 http://dx.doi.org/10.1038/srep16241 |
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author | Zhao, Sanqin Gu, Jiabing Zhao, Youyong Hassan, Muhammad Li, Yinian Ding, Weimin |
author_facet | Zhao, Sanqin Gu, Jiabing Zhao, Youyong Hassan, Muhammad Li, Yinian Ding, Weimin |
author_sort | Zhao, Sanqin |
collection | PubMed |
description | Spikelet number per panicle (SNPP) is one of the most important yield components used to estimate rice yields. The use of high-throughput quantitative image analysis methods for understanding the diversity of the panicle has increased rapidly. However, it is difficult to simultaneously extract panicle branch and spikelet/grain information from images at the same resolution due to the different scales of these traits. To use a lower resolution and meet the accuracy requirement, we proposed an interdisciplinary method that integrated image analysis and a 5-point calibration model to rapidly estimate SNPP. First, a linear relationship model between the total length of the primary branch (TLPB) and the SNPP was established based on the physiological characteristics of the panicle. Second, the TLPB and area (the primary branch region) traits were rapidly extracted by developing image analysis algorithm. Finally, a 5-point calibration method was adopted to improve the universality of the model. The number of panicle samples that the error of the SNPP estimates was less than 10% was greater than 90% by the proposed method. The estimation accuracy was consistent with the accuracy determined using manual measurements. The proposed method uses available concepts and techniques for automated estimations of rice yield information. |
format | Online Article Text |
id | pubmed-4635573 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-46355732015-11-25 A method for estimating spikelet number per panicle: Integrating image analysis and a 5-point calibration model Zhao, Sanqin Gu, Jiabing Zhao, Youyong Hassan, Muhammad Li, Yinian Ding, Weimin Sci Rep Article Spikelet number per panicle (SNPP) is one of the most important yield components used to estimate rice yields. The use of high-throughput quantitative image analysis methods for understanding the diversity of the panicle has increased rapidly. However, it is difficult to simultaneously extract panicle branch and spikelet/grain information from images at the same resolution due to the different scales of these traits. To use a lower resolution and meet the accuracy requirement, we proposed an interdisciplinary method that integrated image analysis and a 5-point calibration model to rapidly estimate SNPP. First, a linear relationship model between the total length of the primary branch (TLPB) and the SNPP was established based on the physiological characteristics of the panicle. Second, the TLPB and area (the primary branch region) traits were rapidly extracted by developing image analysis algorithm. Finally, a 5-point calibration method was adopted to improve the universality of the model. The number of panicle samples that the error of the SNPP estimates was less than 10% was greater than 90% by the proposed method. The estimation accuracy was consistent with the accuracy determined using manual measurements. The proposed method uses available concepts and techniques for automated estimations of rice yield information. Nature Publishing Group 2015-11-06 /pmc/articles/PMC4635573/ /pubmed/26542412 http://dx.doi.org/10.1038/srep16241 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Zhao, Sanqin Gu, Jiabing Zhao, Youyong Hassan, Muhammad Li, Yinian Ding, Weimin A method for estimating spikelet number per panicle: Integrating image analysis and a 5-point calibration model |
title | A method for estimating spikelet number per panicle: Integrating image analysis and a 5-point calibration model |
title_full | A method for estimating spikelet number per panicle: Integrating image analysis and a 5-point calibration model |
title_fullStr | A method for estimating spikelet number per panicle: Integrating image analysis and a 5-point calibration model |
title_full_unstemmed | A method for estimating spikelet number per panicle: Integrating image analysis and a 5-point calibration model |
title_short | A method for estimating spikelet number per panicle: Integrating image analysis and a 5-point calibration model |
title_sort | method for estimating spikelet number per panicle: integrating image analysis and a 5-point calibration model |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4635573/ https://www.ncbi.nlm.nih.gov/pubmed/26542412 http://dx.doi.org/10.1038/srep16241 |
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