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B-HIT - A Tool for Harvesting and Indexing Biodiversity Data

With the rapidly growing number of data publishers, the process of harvesting and indexing information to offer advanced search and discovery becomes a critical bottleneck in globally distributed primary biodiversity data infrastructures. The Global Biodiversity Information Facility (GBIF) implement...

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Autores principales: Kelbert, Patricia, Droege, Gabriele, Barker, Katharine, Braak, Kyle, Cawsey, E. Margaret, Coddington, Jonathan, Robertson, Tim, Whitacre, Jamie, Güntsch, Anton
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4636251/
https://www.ncbi.nlm.nih.gov/pubmed/26544980
http://dx.doi.org/10.1371/journal.pone.0142240
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author Kelbert, Patricia
Droege, Gabriele
Barker, Katharine
Braak, Kyle
Cawsey, E. Margaret
Coddington, Jonathan
Robertson, Tim
Whitacre, Jamie
Güntsch, Anton
author_facet Kelbert, Patricia
Droege, Gabriele
Barker, Katharine
Braak, Kyle
Cawsey, E. Margaret
Coddington, Jonathan
Robertson, Tim
Whitacre, Jamie
Güntsch, Anton
author_sort Kelbert, Patricia
collection PubMed
description With the rapidly growing number of data publishers, the process of harvesting and indexing information to offer advanced search and discovery becomes a critical bottleneck in globally distributed primary biodiversity data infrastructures. The Global Biodiversity Information Facility (GBIF) implemented a Harvesting and Indexing Toolkit (HIT), which largely automates data harvesting activities for hundreds of collection and observational data providers. The team of the Botanic Garden and Botanical Museum Berlin-Dahlem has extended this well-established system with a range of additional functions, including improved processing of multiple taxon identifications, the ability to represent associations between specimen and observation units, new data quality control and new reporting capabilities. The open source software B-HIT can be freely installed and used for setting up thematic networks serving the demands of particular user groups.
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spelling pubmed-46362512015-11-13 B-HIT - A Tool for Harvesting and Indexing Biodiversity Data Kelbert, Patricia Droege, Gabriele Barker, Katharine Braak, Kyle Cawsey, E. Margaret Coddington, Jonathan Robertson, Tim Whitacre, Jamie Güntsch, Anton PLoS One Research Article With the rapidly growing number of data publishers, the process of harvesting and indexing information to offer advanced search and discovery becomes a critical bottleneck in globally distributed primary biodiversity data infrastructures. The Global Biodiversity Information Facility (GBIF) implemented a Harvesting and Indexing Toolkit (HIT), which largely automates data harvesting activities for hundreds of collection and observational data providers. The team of the Botanic Garden and Botanical Museum Berlin-Dahlem has extended this well-established system with a range of additional functions, including improved processing of multiple taxon identifications, the ability to represent associations between specimen and observation units, new data quality control and new reporting capabilities. The open source software B-HIT can be freely installed and used for setting up thematic networks serving the demands of particular user groups. Public Library of Science 2015-11-06 /pmc/articles/PMC4636251/ /pubmed/26544980 http://dx.doi.org/10.1371/journal.pone.0142240 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration, which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose.
spellingShingle Research Article
Kelbert, Patricia
Droege, Gabriele
Barker, Katharine
Braak, Kyle
Cawsey, E. Margaret
Coddington, Jonathan
Robertson, Tim
Whitacre, Jamie
Güntsch, Anton
B-HIT - A Tool for Harvesting and Indexing Biodiversity Data
title B-HIT - A Tool for Harvesting and Indexing Biodiversity Data
title_full B-HIT - A Tool for Harvesting and Indexing Biodiversity Data
title_fullStr B-HIT - A Tool for Harvesting and Indexing Biodiversity Data
title_full_unstemmed B-HIT - A Tool for Harvesting and Indexing Biodiversity Data
title_short B-HIT - A Tool for Harvesting and Indexing Biodiversity Data
title_sort b-hit - a tool for harvesting and indexing biodiversity data
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4636251/
https://www.ncbi.nlm.nih.gov/pubmed/26544980
http://dx.doi.org/10.1371/journal.pone.0142240
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