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The free energy cost of accurate biochemical oscillations

Oscillation is an important cellular process that regulates timing of different vital life cycles. However, in the noisy cellular environment, oscillations can be highly inaccurate due to phase fluctuations. It remains poorly understood how biochemical circuits suppress phase fluctuations and what i...

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Detalles Bibliográficos
Autores principales: Cao, Yuansheng, Wang, Hongli, Ouyang, Qi, Tu, Yuhai
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4638330/
https://www.ncbi.nlm.nih.gov/pubmed/26566392
http://dx.doi.org/10.1038/nphys3412
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author Cao, Yuansheng
Wang, Hongli
Ouyang, Qi
Tu, Yuhai
author_facet Cao, Yuansheng
Wang, Hongli
Ouyang, Qi
Tu, Yuhai
author_sort Cao, Yuansheng
collection PubMed
description Oscillation is an important cellular process that regulates timing of different vital life cycles. However, in the noisy cellular environment, oscillations can be highly inaccurate due to phase fluctuations. It remains poorly understood how biochemical circuits suppress phase fluctuations and what is the incurred thermodynamic cost. Here, we study three different types of biochemical oscillations representing three basic oscillation motifs shared by all known oscillatory systems. In all the systems studied, we find that the phase diffusion constant depends on the free energy dissipation per period following the same inverse relation parameterized by system specific constants. This relationship and its range of validity are shown analytically in a model of noisy oscillation. Microscopically, we find that the oscillation is driven by multiple irreversible cycles that hydrolyze the fuel molecules such as ATP; the number of phase coherent periods is proportional to the free energy consumed per period. Experimental evidence in support of this general relationship and testable predictions are also presented.
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spelling pubmed-46383302016-03-01 The free energy cost of accurate biochemical oscillations Cao, Yuansheng Wang, Hongli Ouyang, Qi Tu, Yuhai Nat Phys Article Oscillation is an important cellular process that regulates timing of different vital life cycles. However, in the noisy cellular environment, oscillations can be highly inaccurate due to phase fluctuations. It remains poorly understood how biochemical circuits suppress phase fluctuations and what is the incurred thermodynamic cost. Here, we study three different types of biochemical oscillations representing three basic oscillation motifs shared by all known oscillatory systems. In all the systems studied, we find that the phase diffusion constant depends on the free energy dissipation per period following the same inverse relation parameterized by system specific constants. This relationship and its range of validity are shown analytically in a model of noisy oscillation. Microscopically, we find that the oscillation is driven by multiple irreversible cycles that hydrolyze the fuel molecules such as ATP; the number of phase coherent periods is proportional to the free energy consumed per period. Experimental evidence in support of this general relationship and testable predictions are also presented. 2015-07-27 2015-09 /pmc/articles/PMC4638330/ /pubmed/26566392 http://dx.doi.org/10.1038/nphys3412 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Cao, Yuansheng
Wang, Hongli
Ouyang, Qi
Tu, Yuhai
The free energy cost of accurate biochemical oscillations
title The free energy cost of accurate biochemical oscillations
title_full The free energy cost of accurate biochemical oscillations
title_fullStr The free energy cost of accurate biochemical oscillations
title_full_unstemmed The free energy cost of accurate biochemical oscillations
title_short The free energy cost of accurate biochemical oscillations
title_sort free energy cost of accurate biochemical oscillations
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4638330/
https://www.ncbi.nlm.nih.gov/pubmed/26566392
http://dx.doi.org/10.1038/nphys3412
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