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The free energy cost of accurate biochemical oscillations
Oscillation is an important cellular process that regulates timing of different vital life cycles. However, in the noisy cellular environment, oscillations can be highly inaccurate due to phase fluctuations. It remains poorly understood how biochemical circuits suppress phase fluctuations and what i...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4638330/ https://www.ncbi.nlm.nih.gov/pubmed/26566392 http://dx.doi.org/10.1038/nphys3412 |
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author | Cao, Yuansheng Wang, Hongli Ouyang, Qi Tu, Yuhai |
author_facet | Cao, Yuansheng Wang, Hongli Ouyang, Qi Tu, Yuhai |
author_sort | Cao, Yuansheng |
collection | PubMed |
description | Oscillation is an important cellular process that regulates timing of different vital life cycles. However, in the noisy cellular environment, oscillations can be highly inaccurate due to phase fluctuations. It remains poorly understood how biochemical circuits suppress phase fluctuations and what is the incurred thermodynamic cost. Here, we study three different types of biochemical oscillations representing three basic oscillation motifs shared by all known oscillatory systems. In all the systems studied, we find that the phase diffusion constant depends on the free energy dissipation per period following the same inverse relation parameterized by system specific constants. This relationship and its range of validity are shown analytically in a model of noisy oscillation. Microscopically, we find that the oscillation is driven by multiple irreversible cycles that hydrolyze the fuel molecules such as ATP; the number of phase coherent periods is proportional to the free energy consumed per period. Experimental evidence in support of this general relationship and testable predictions are also presented. |
format | Online Article Text |
id | pubmed-4638330 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
record_format | MEDLINE/PubMed |
spelling | pubmed-46383302016-03-01 The free energy cost of accurate biochemical oscillations Cao, Yuansheng Wang, Hongli Ouyang, Qi Tu, Yuhai Nat Phys Article Oscillation is an important cellular process that regulates timing of different vital life cycles. However, in the noisy cellular environment, oscillations can be highly inaccurate due to phase fluctuations. It remains poorly understood how biochemical circuits suppress phase fluctuations and what is the incurred thermodynamic cost. Here, we study three different types of biochemical oscillations representing three basic oscillation motifs shared by all known oscillatory systems. In all the systems studied, we find that the phase diffusion constant depends on the free energy dissipation per period following the same inverse relation parameterized by system specific constants. This relationship and its range of validity are shown analytically in a model of noisy oscillation. Microscopically, we find that the oscillation is driven by multiple irreversible cycles that hydrolyze the fuel molecules such as ATP; the number of phase coherent periods is proportional to the free energy consumed per period. Experimental evidence in support of this general relationship and testable predictions are also presented. 2015-07-27 2015-09 /pmc/articles/PMC4638330/ /pubmed/26566392 http://dx.doi.org/10.1038/nphys3412 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms |
spellingShingle | Article Cao, Yuansheng Wang, Hongli Ouyang, Qi Tu, Yuhai The free energy cost of accurate biochemical oscillations |
title | The free energy cost of accurate biochemical oscillations |
title_full | The free energy cost of accurate biochemical oscillations |
title_fullStr | The free energy cost of accurate biochemical oscillations |
title_full_unstemmed | The free energy cost of accurate biochemical oscillations |
title_short | The free energy cost of accurate biochemical oscillations |
title_sort | free energy cost of accurate biochemical oscillations |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4638330/ https://www.ncbi.nlm.nih.gov/pubmed/26566392 http://dx.doi.org/10.1038/nphys3412 |
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