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Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins
Two novel six- and seven-dimensional NMR experiments are proposed. The new experiments employ non-uniform sampling that enables achieving high resolution in four indirectly detected dimensions and synchronous sampling in the additional dimensions using projection spectroscopy principle. The resulted...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642589/ https://www.ncbi.nlm.nih.gov/pubmed/26403428 http://dx.doi.org/10.1007/s10858-015-9987-7 |
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author | Żerko, Szymon Koźmiński, Wiktor |
author_facet | Żerko, Szymon Koźmiński, Wiktor |
author_sort | Żerko, Szymon |
collection | PubMed |
description | Two novel six- and seven-dimensional NMR experiments are proposed. The new experiments employ non-uniform sampling that enables achieving high resolution in four indirectly detected dimensions and synchronous sampling in the additional dimensions using projection spectroscopy principle. The resulted data sets could be processed as five-dimensional data using existing software. The experiments facilitate resonance assignment of intrinsically disordered proteins. The novel experiments were successfully tested using 1 mM sample of α-synuclein on 600 and 800 MHz NMR spectrometers equipped with standard room temperature probes. The experiments allowed backbone assignment from a 1-day acquisition. |
format | Online Article Text |
id | pubmed-4642589 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-46425892015-11-17 Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins Żerko, Szymon Koźmiński, Wiktor J Biomol NMR Article Two novel six- and seven-dimensional NMR experiments are proposed. The new experiments employ non-uniform sampling that enables achieving high resolution in four indirectly detected dimensions and synchronous sampling in the additional dimensions using projection spectroscopy principle. The resulted data sets could be processed as five-dimensional data using existing software. The experiments facilitate resonance assignment of intrinsically disordered proteins. The novel experiments were successfully tested using 1 mM sample of α-synuclein on 600 and 800 MHz NMR spectrometers equipped with standard room temperature probes. The experiments allowed backbone assignment from a 1-day acquisition. Springer Netherlands 2015-09-24 2015 /pmc/articles/PMC4642589/ /pubmed/26403428 http://dx.doi.org/10.1007/s10858-015-9987-7 Text en © The Author(s) 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Article Żerko, Szymon Koźmiński, Wiktor Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins |
title | Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins |
title_full | Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins |
title_fullStr | Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins |
title_full_unstemmed | Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins |
title_short | Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins |
title_sort | six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642589/ https://www.ncbi.nlm.nih.gov/pubmed/26403428 http://dx.doi.org/10.1007/s10858-015-9987-7 |
work_keys_str_mv | AT zerkoszymon sixandsevendimensionalexperimentsbycombinationofsparserandomsamplingandprojectionspectroscopydedicatedforbackboneresonanceassignmentofintrinsicallydisorderedproteins AT kozminskiwiktor sixandsevendimensionalexperimentsbycombinationofsparserandomsamplingandprojectionspectroscopydedicatedforbackboneresonanceassignmentofintrinsicallydisorderedproteins |