Cargando…

Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins

Two novel six- and seven-dimensional NMR experiments are proposed. The new experiments employ non-uniform sampling that enables achieving high resolution in four indirectly detected dimensions and synchronous sampling in the additional dimensions using projection spectroscopy principle. The resulted...

Descripción completa

Detalles Bibliográficos
Autores principales: Żerko, Szymon, Koźmiński, Wiktor
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642589/
https://www.ncbi.nlm.nih.gov/pubmed/26403428
http://dx.doi.org/10.1007/s10858-015-9987-7
_version_ 1782400386086207488
author Żerko, Szymon
Koźmiński, Wiktor
author_facet Żerko, Szymon
Koźmiński, Wiktor
author_sort Żerko, Szymon
collection PubMed
description Two novel six- and seven-dimensional NMR experiments are proposed. The new experiments employ non-uniform sampling that enables achieving high resolution in four indirectly detected dimensions and synchronous sampling in the additional dimensions using projection spectroscopy principle. The resulted data sets could be processed as five-dimensional data using existing software. The experiments facilitate resonance assignment of intrinsically disordered proteins. The novel experiments were successfully tested using 1 mM sample of α-synuclein on 600 and 800 MHz NMR spectrometers equipped with standard room temperature probes. The experiments allowed backbone assignment from a 1-day acquisition.
format Online
Article
Text
id pubmed-4642589
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Springer Netherlands
record_format MEDLINE/PubMed
spelling pubmed-46425892015-11-17 Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins Żerko, Szymon Koźmiński, Wiktor J Biomol NMR Article Two novel six- and seven-dimensional NMR experiments are proposed. The new experiments employ non-uniform sampling that enables achieving high resolution in four indirectly detected dimensions and synchronous sampling in the additional dimensions using projection spectroscopy principle. The resulted data sets could be processed as five-dimensional data using existing software. The experiments facilitate resonance assignment of intrinsically disordered proteins. The novel experiments were successfully tested using 1 mM sample of α-synuclein on 600 and 800 MHz NMR spectrometers equipped with standard room temperature probes. The experiments allowed backbone assignment from a 1-day acquisition. Springer Netherlands 2015-09-24 2015 /pmc/articles/PMC4642589/ /pubmed/26403428 http://dx.doi.org/10.1007/s10858-015-9987-7 Text en © The Author(s) 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Article
Żerko, Szymon
Koźmiński, Wiktor
Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins
title Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins
title_full Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins
title_fullStr Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins
title_full_unstemmed Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins
title_short Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins
title_sort six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642589/
https://www.ncbi.nlm.nih.gov/pubmed/26403428
http://dx.doi.org/10.1007/s10858-015-9987-7
work_keys_str_mv AT zerkoszymon sixandsevendimensionalexperimentsbycombinationofsparserandomsamplingandprojectionspectroscopydedicatedforbackboneresonanceassignmentofintrinsicallydisorderedproteins
AT kozminskiwiktor sixandsevendimensionalexperimentsbycombinationofsparserandomsamplingandprojectionspectroscopydedicatedforbackboneresonanceassignmentofintrinsicallydisorderedproteins