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MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography
The MRC binary file format is widely used in the three-dimensional electron microscopy field for storing image and volume data. Files contain a header which describes the kind of data held, together with other important metadata. In response to advances in electron microscopy techniques, a number of...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Academic Press
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642651/ https://www.ncbi.nlm.nih.gov/pubmed/25882513 http://dx.doi.org/10.1016/j.jsb.2015.04.002 |
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author | Cheng, Anchi Henderson, Richard Mastronarde, David Ludtke, Steven J. Schoenmakers, Remco H.M. Short, Judith Marabini, Roberto Dallakyan, Sargis Agard, David Winn, Martyn |
author_facet | Cheng, Anchi Henderson, Richard Mastronarde, David Ludtke, Steven J. Schoenmakers, Remco H.M. Short, Judith Marabini, Roberto Dallakyan, Sargis Agard, David Winn, Martyn |
author_sort | Cheng, Anchi |
collection | PubMed |
description | The MRC binary file format is widely used in the three-dimensional electron microscopy field for storing image and volume data. Files contain a header which describes the kind of data held, together with other important metadata. In response to advances in electron microscopy techniques, a number of variants to the file format have emerged which contain useful additional data, but which limit interoperability between different software packages. Following extensive discussions, the authors, who represent leading software packages in the field, propose a set of extensions to the MRC format standard designed to accommodate these variants, while restoring interoperability. The MRC format is equivalent to the map format used in the CCP4 suite for macromolecular crystallography, and the proposal also maintains interoperability with crystallography software. This Technical Note describes the proposed extensions, and serves as a reference for the standard. |
format | Online Article Text |
id | pubmed-4642651 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Academic Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-46426512015-12-03 MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography Cheng, Anchi Henderson, Richard Mastronarde, David Ludtke, Steven J. Schoenmakers, Remco H.M. Short, Judith Marabini, Roberto Dallakyan, Sargis Agard, David Winn, Martyn J Struct Biol Technical Note The MRC binary file format is widely used in the three-dimensional electron microscopy field for storing image and volume data. Files contain a header which describes the kind of data held, together with other important metadata. In response to advances in electron microscopy techniques, a number of variants to the file format have emerged which contain useful additional data, but which limit interoperability between different software packages. Following extensive discussions, the authors, who represent leading software packages in the field, propose a set of extensions to the MRC format standard designed to accommodate these variants, while restoring interoperability. The MRC format is equivalent to the map format used in the CCP4 suite for macromolecular crystallography, and the proposal also maintains interoperability with crystallography software. This Technical Note describes the proposed extensions, and serves as a reference for the standard. Academic Press 2015-11 /pmc/articles/PMC4642651/ /pubmed/25882513 http://dx.doi.org/10.1016/j.jsb.2015.04.002 Text en © 2015 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Technical Note Cheng, Anchi Henderson, Richard Mastronarde, David Ludtke, Steven J. Schoenmakers, Remco H.M. Short, Judith Marabini, Roberto Dallakyan, Sargis Agard, David Winn, Martyn MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography |
title | MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography |
title_full | MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography |
title_fullStr | MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography |
title_full_unstemmed | MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography |
title_short | MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography |
title_sort | mrc2014: extensions to the mrc format header for electron cryo-microscopy and tomography |
topic | Technical Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642651/ https://www.ncbi.nlm.nih.gov/pubmed/25882513 http://dx.doi.org/10.1016/j.jsb.2015.04.002 |
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