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MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography

The MRC binary file format is widely used in the three-dimensional electron microscopy field for storing image and volume data. Files contain a header which describes the kind of data held, together with other important metadata. In response to advances in electron microscopy techniques, a number of...

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Autores principales: Cheng, Anchi, Henderson, Richard, Mastronarde, David, Ludtke, Steven J., Schoenmakers, Remco H.M., Short, Judith, Marabini, Roberto, Dallakyan, Sargis, Agard, David, Winn, Martyn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Academic Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642651/
https://www.ncbi.nlm.nih.gov/pubmed/25882513
http://dx.doi.org/10.1016/j.jsb.2015.04.002
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author Cheng, Anchi
Henderson, Richard
Mastronarde, David
Ludtke, Steven J.
Schoenmakers, Remco H.M.
Short, Judith
Marabini, Roberto
Dallakyan, Sargis
Agard, David
Winn, Martyn
author_facet Cheng, Anchi
Henderson, Richard
Mastronarde, David
Ludtke, Steven J.
Schoenmakers, Remco H.M.
Short, Judith
Marabini, Roberto
Dallakyan, Sargis
Agard, David
Winn, Martyn
author_sort Cheng, Anchi
collection PubMed
description The MRC binary file format is widely used in the three-dimensional electron microscopy field for storing image and volume data. Files contain a header which describes the kind of data held, together with other important metadata. In response to advances in electron microscopy techniques, a number of variants to the file format have emerged which contain useful additional data, but which limit interoperability between different software packages. Following extensive discussions, the authors, who represent leading software packages in the field, propose a set of extensions to the MRC format standard designed to accommodate these variants, while restoring interoperability. The MRC format is equivalent to the map format used in the CCP4 suite for macromolecular crystallography, and the proposal also maintains interoperability with crystallography software. This Technical Note describes the proposed extensions, and serves as a reference for the standard.
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spelling pubmed-46426512015-12-03 MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography Cheng, Anchi Henderson, Richard Mastronarde, David Ludtke, Steven J. Schoenmakers, Remco H.M. Short, Judith Marabini, Roberto Dallakyan, Sargis Agard, David Winn, Martyn J Struct Biol Technical Note The MRC binary file format is widely used in the three-dimensional electron microscopy field for storing image and volume data. Files contain a header which describes the kind of data held, together with other important metadata. In response to advances in electron microscopy techniques, a number of variants to the file format have emerged which contain useful additional data, but which limit interoperability between different software packages. Following extensive discussions, the authors, who represent leading software packages in the field, propose a set of extensions to the MRC format standard designed to accommodate these variants, while restoring interoperability. The MRC format is equivalent to the map format used in the CCP4 suite for macromolecular crystallography, and the proposal also maintains interoperability with crystallography software. This Technical Note describes the proposed extensions, and serves as a reference for the standard. Academic Press 2015-11 /pmc/articles/PMC4642651/ /pubmed/25882513 http://dx.doi.org/10.1016/j.jsb.2015.04.002 Text en © 2015 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Technical Note
Cheng, Anchi
Henderson, Richard
Mastronarde, David
Ludtke, Steven J.
Schoenmakers, Remco H.M.
Short, Judith
Marabini, Roberto
Dallakyan, Sargis
Agard, David
Winn, Martyn
MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography
title MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography
title_full MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography
title_fullStr MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography
title_full_unstemmed MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography
title_short MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography
title_sort mrc2014: extensions to the mrc format header for electron cryo-microscopy and tomography
topic Technical Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642651/
https://www.ncbi.nlm.nih.gov/pubmed/25882513
http://dx.doi.org/10.1016/j.jsb.2015.04.002
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