Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3

Syntrophaceticus schinkii strain Sp3 is a mesophilic syntrophic acetate oxidizing bacterium, belonging to the Clostridia class within the phylum Firmicutes, originally isolated from a mesophilic methanogenic digester. It has been shown to oxidize acetate in co-cultivation with hydrogenotrophic metha...

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Autores principales: Manzoor, Shahid, Müller, Bettina, Niazi, Adnan, Schnürer, Anna, Bongcam-Rudloff, Erik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Short Genome Report
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642661/
https://www.ncbi.nlm.nih.gov/pubmed/26566424
http://dx.doi.org/10.1186/s40793-015-0092-z
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author Manzoor, Shahid
Müller, Bettina
Niazi, Adnan
Schnürer, Anna
Bongcam-Rudloff, Erik
author_facet Manzoor, Shahid
Müller, Bettina
Niazi, Adnan
Schnürer, Anna
Bongcam-Rudloff, Erik
author_sort Manzoor, Shahid
collection PubMed
description Syntrophaceticus schinkii strain Sp3 is a mesophilic syntrophic acetate oxidizing bacterium, belonging to the Clostridia class within the phylum Firmicutes, originally isolated from a mesophilic methanogenic digester. It has been shown to oxidize acetate in co-cultivation with hydrogenotrophic methanogens forming methane. The draft genome shows a total size of 3,196,921 bp, encoding 3,688 open reading frames, which includes 3,445 predicted protein-encoding genes and 55 RNA genes. Here, we are presenting assembly and annotation features as well as basic genomic properties of the type strain Sp3. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0092-z) contains supplementary material, which is available to authorized users.
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spelling pubmed-46426612015-11-13 Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3 Manzoor, Shahid Müller, Bettina Niazi, Adnan Schnürer, Anna Bongcam-Rudloff, Erik Stand Genomic Sci Short Genome Report Syntrophaceticus schinkii strain Sp3 is a mesophilic syntrophic acetate oxidizing bacterium, belonging to the Clostridia class within the phylum Firmicutes, originally isolated from a mesophilic methanogenic digester. It has been shown to oxidize acetate in co-cultivation with hydrogenotrophic methanogens forming methane. The draft genome shows a total size of 3,196,921 bp, encoding 3,688 open reading frames, which includes 3,445 predicted protein-encoding genes and 55 RNA genes. Here, we are presenting assembly and annotation features as well as basic genomic properties of the type strain Sp3. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0092-z) contains supplementary material, which is available to authorized users. BioMed Central 2015-11-11 /pmc/articles/PMC4642661/ /pubmed/26566424 http://dx.doi.org/10.1186/s40793-015-0092-z Text en © Manzoor et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Manzoor, Shahid
Müller, Bettina
Niazi, Adnan
Schnürer, Anna
Bongcam-Rudloff, Erik
Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3
title Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3
title_full Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3
title_fullStr Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3
title_full_unstemmed Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3
title_short Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3
title_sort working draft genome sequence of the mesophilic acetate oxidizing bacterium syntrophaceticus schinkii strain sp3
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642661/
https://www.ncbi.nlm.nih.gov/pubmed/26566424
http://dx.doi.org/10.1186/s40793-015-0092-z
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