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High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture

Gracilimonas tropica Choi et al. 2009 is a member of order Sphingobacteriales, class Sphingobacteriia. Three species of the genus Gracilimonas have been isolated from marine seawater or a salt mine and showed extremely halotolerant and mesophilic features, although close relatives are extremely halo...

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Autores principales: Choi, Dong Han, Ahn, Chisang, Jang, Gwang Il, Lapidus, Alla, Han, James, Reddy, T. B. K., Huntemann, Marcel, Pati, Amrita, Ivanova, Natalia, Markowitz, Victor, Rohde, Manfred, Tindall, Brian, Göker, Markus, Woyke, Tanja, Klenk, Hans-Peter, Kyrpides, Nikos C, Cho, Byung Cheol
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642740/
https://www.ncbi.nlm.nih.gov/pubmed/26566423
http://dx.doi.org/10.1186/s40793-015-0088-8
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author Choi, Dong Han
Ahn, Chisang
Jang, Gwang Il
Lapidus, Alla
Han, James
Reddy, T. B. K.
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia
Markowitz, Victor
Rohde, Manfred
Tindall, Brian
Göker, Markus
Woyke, Tanja
Klenk, Hans-Peter
Kyrpides, Nikos C
Cho, Byung Cheol
author_facet Choi, Dong Han
Ahn, Chisang
Jang, Gwang Il
Lapidus, Alla
Han, James
Reddy, T. B. K.
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia
Markowitz, Victor
Rohde, Manfred
Tindall, Brian
Göker, Markus
Woyke, Tanja
Klenk, Hans-Peter
Kyrpides, Nikos C
Cho, Byung Cheol
author_sort Choi, Dong Han
collection PubMed
description Gracilimonas tropica Choi et al. 2009 is a member of order Sphingobacteriales, class Sphingobacteriia. Three species of the genus Gracilimonas have been isolated from marine seawater or a salt mine and showed extremely halotolerant and mesophilic features, although close relatives are extremely halophilic or thermophilic. The type strain of the type species of Gracilimonas, G. tropica DSM19535(T), was isolated from a Synechococcus culture which was established from the tropical sea-surface water of the Pacific Ocean. The genome of the strain DSM19535(T) was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes project. Here, we describe the genomic features of the strain. The 3,831,242 bp long draft genome consists of 48 contigs with 3373 protein-coding and 53 RNA genes. The strain seems to adapt to phosphate limitation and requires amino acids from external environment. In addition, genomic analyses and pasteurization experiment suggested that G. tropica DSM19535(T) did not form spore.
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spelling pubmed-46427402015-11-13 High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture Choi, Dong Han Ahn, Chisang Jang, Gwang Il Lapidus, Alla Han, James Reddy, T. B. K. Huntemann, Marcel Pati, Amrita Ivanova, Natalia Markowitz, Victor Rohde, Manfred Tindall, Brian Göker, Markus Woyke, Tanja Klenk, Hans-Peter Kyrpides, Nikos C Cho, Byung Cheol Stand Genomic Sci Short Genome Report Gracilimonas tropica Choi et al. 2009 is a member of order Sphingobacteriales, class Sphingobacteriia. Three species of the genus Gracilimonas have been isolated from marine seawater or a salt mine and showed extremely halotolerant and mesophilic features, although close relatives are extremely halophilic or thermophilic. The type strain of the type species of Gracilimonas, G. tropica DSM19535(T), was isolated from a Synechococcus culture which was established from the tropical sea-surface water of the Pacific Ocean. The genome of the strain DSM19535(T) was sequenced through the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes project. Here, we describe the genomic features of the strain. The 3,831,242 bp long draft genome consists of 48 contigs with 3373 protein-coding and 53 RNA genes. The strain seems to adapt to phosphate limitation and requires amino acids from external environment. In addition, genomic analyses and pasteurization experiment suggested that G. tropica DSM19535(T) did not form spore. BioMed Central 2015-11-11 /pmc/articles/PMC4642740/ /pubmed/26566423 http://dx.doi.org/10.1186/s40793-015-0088-8 Text en © Choi et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Choi, Dong Han
Ahn, Chisang
Jang, Gwang Il
Lapidus, Alla
Han, James
Reddy, T. B. K.
Huntemann, Marcel
Pati, Amrita
Ivanova, Natalia
Markowitz, Victor
Rohde, Manfred
Tindall, Brian
Göker, Markus
Woyke, Tanja
Klenk, Hans-Peter
Kyrpides, Nikos C
Cho, Byung Cheol
High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture
title High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture
title_full High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture
title_fullStr High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture
title_full_unstemmed High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture
title_short High-quality draft genome sequence of Gracilimonas tropica CL-CB462(T) (DSM 19535(T)), isolated from a Synechococcus culture
title_sort high-quality draft genome sequence of gracilimonas tropica cl-cb462(t) (dsm 19535(t)), isolated from a synechococcus culture
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642740/
https://www.ncbi.nlm.nih.gov/pubmed/26566423
http://dx.doi.org/10.1186/s40793-015-0088-8
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