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High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1
Strain 3.5.1 was isolated from soils of the Republic of Tatarstan, Russia, on the basis of presence of a high phytate-degrading activity. Strains with such activities attract special interest because of its potential use as feed additives and natural manures. Strain 3.5.1 harbors a 99 % 16S rRNA nuc...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642748/ https://www.ncbi.nlm.nih.gov/pubmed/26566420 http://dx.doi.org/10.1186/s40793-015-0093-y |
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author | Suleimanova, Aliya D. Toymentseva, Anna A. Boulygina, Eugenia A. Kazakov, Sergey V. Mardanova, Ayslu M. Balaban, Nelly P. Sharipova, Margarita R. |
author_facet | Suleimanova, Aliya D. Toymentseva, Anna A. Boulygina, Eugenia A. Kazakov, Sergey V. Mardanova, Ayslu M. Balaban, Nelly P. Sharipova, Margarita R. |
author_sort | Suleimanova, Aliya D. |
collection | PubMed |
description | Strain 3.5.1 was isolated from soils of the Republic of Tatarstan, Russia, on the basis of presence of a high phytate-degrading activity. Strains with such activities attract special interest because of its potential use as feed additives and natural manures. Strain 3.5.1 harbors a 99 % 16S rRNA nucleotide sequence similarity to different Pantoea species (P. vagans, P. ananatis, P. agglomerans, P. anthophila and Pantoea sp.) and exhibits unique biochemical properties that do not allow strain identification up to species. Moreover, the strain 3.5.1 shows a low ANI and MALDI-TOF Mass Spectrometry scores. Thus, it is likely that the strain 3.5.1 represents a new Pantoea species. Here, we present the genome sequence of Pantoea sp. strain 3.5.1. The 4,964,649 bp draft genome consists of 23 contigs with 4,556 protein-coding and 143 RNA genes. Genome sequencing and annotation revealed two phytase genes and putative regulatory genes controlling its activity. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0093-y) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-4642748 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-46427482015-11-13 High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1 Suleimanova, Aliya D. Toymentseva, Anna A. Boulygina, Eugenia A. Kazakov, Sergey V. Mardanova, Ayslu M. Balaban, Nelly P. Sharipova, Margarita R. Stand Genomic Sci Extended Genome Report Strain 3.5.1 was isolated from soils of the Republic of Tatarstan, Russia, on the basis of presence of a high phytate-degrading activity. Strains with such activities attract special interest because of its potential use as feed additives and natural manures. Strain 3.5.1 harbors a 99 % 16S rRNA nucleotide sequence similarity to different Pantoea species (P. vagans, P. ananatis, P. agglomerans, P. anthophila and Pantoea sp.) and exhibits unique biochemical properties that do not allow strain identification up to species. Moreover, the strain 3.5.1 shows a low ANI and MALDI-TOF Mass Spectrometry scores. Thus, it is likely that the strain 3.5.1 represents a new Pantoea species. Here, we present the genome sequence of Pantoea sp. strain 3.5.1. The 4,964,649 bp draft genome consists of 23 contigs with 4,556 protein-coding and 143 RNA genes. Genome sequencing and annotation revealed two phytase genes and putative regulatory genes controlling its activity. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0093-y) contains supplementary material, which is available to authorized users. BioMed Central 2015-11-11 /pmc/articles/PMC4642748/ /pubmed/26566420 http://dx.doi.org/10.1186/s40793-015-0093-y Text en © Suleimanova et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Extended Genome Report Suleimanova, Aliya D. Toymentseva, Anna A. Boulygina, Eugenia A. Kazakov, Sergey V. Mardanova, Ayslu M. Balaban, Nelly P. Sharipova, Margarita R. High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1 |
title | High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1 |
title_full | High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1 |
title_fullStr | High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1 |
title_full_unstemmed | High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1 |
title_short | High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1 |
title_sort | high-quality draft genome sequence of a new phytase-producing microorganism pantoea sp. 3.5.1 |
topic | Extended Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642748/ https://www.ncbi.nlm.nih.gov/pubmed/26566420 http://dx.doi.org/10.1186/s40793-015-0093-y |
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