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Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna

The phosphite assimilating bacterium, P. glucosidilyticus DD6b, was isolated from the gut of the zooplankton Daphnia magna. Its 3,872,381 bp high-quality draft genome is arranged into 93 contigs containing 3311 predicted protein-coding and 41 RNA-encoding genes. This genome report presents the speci...

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Autores principales: Poehlein, Anja, Daniel, Rolf, Simeonova, Diliana D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642753/
https://www.ncbi.nlm.nih.gov/pubmed/26566425
http://dx.doi.org/10.1186/s40793-015-0086-x
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author Poehlein, Anja
Daniel, Rolf
Simeonova, Diliana D.
author_facet Poehlein, Anja
Daniel, Rolf
Simeonova, Diliana D.
author_sort Poehlein, Anja
collection PubMed
description The phosphite assimilating bacterium, P. glucosidilyticus DD6b, was isolated from the gut of the zooplankton Daphnia magna. Its 3,872,381 bp high-quality draft genome is arranged into 93 contigs containing 3311 predicted protein-coding and 41 RNA-encoding genes. This genome report presents the specific properties and common features of P. glucosidilyticus DD6b genome in comparison with the genomes of P. glucosidilyticus type strain DSM 23,534, and another five Pedobacter type strains with publicly available completely sequenced genomes. Here, we present the first journal report on P. glucosidilyticus genome sequence and provide information on a new specific physiological determinant of P. glucosidilyticus species. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0086-x) contains supplementary material, which is available to authorized users.
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spelling pubmed-46427532015-11-13 Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna Poehlein, Anja Daniel, Rolf Simeonova, Diliana D. Stand Genomic Sci Short Genome Report The phosphite assimilating bacterium, P. glucosidilyticus DD6b, was isolated from the gut of the zooplankton Daphnia magna. Its 3,872,381 bp high-quality draft genome is arranged into 93 contigs containing 3311 predicted protein-coding and 41 RNA-encoding genes. This genome report presents the specific properties and common features of P. glucosidilyticus DD6b genome in comparison with the genomes of P. glucosidilyticus type strain DSM 23,534, and another five Pedobacter type strains with publicly available completely sequenced genomes. Here, we present the first journal report on P. glucosidilyticus genome sequence and provide information on a new specific physiological determinant of P. glucosidilyticus species. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0086-x) contains supplementary material, which is available to authorized users. BioMed Central 2015-11-11 /pmc/articles/PMC4642753/ /pubmed/26566425 http://dx.doi.org/10.1186/s40793-015-0086-x Text en © Poehlein et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Short Genome Report
Poehlein, Anja
Daniel, Rolf
Simeonova, Diliana D.
Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna
title Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna
title_full Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna
title_fullStr Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna
title_full_unstemmed Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna
title_short Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna
title_sort genome sequence of pedobacter glucosidilyticus dd6b, isolated from zooplankton daphnia magna
topic Short Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642753/
https://www.ncbi.nlm.nih.gov/pubmed/26566425
http://dx.doi.org/10.1186/s40793-015-0086-x
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