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Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg
Due to abundant contamination in various foods, the pathogenesis of Bacillus cereus has been widely studied in physiological and molecular level. B. cereus FORC_005 was isolated from a Korean side dish, soy sauce braised fish-cake with quail-egg in South Korea. While 21 complete genome sequences of...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2015
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642778/ https://www.ncbi.nlm.nih.gov/pubmed/26566422 http://dx.doi.org/10.1186/s40793-015-0094-x |
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author | Lee, Dong-Hoon Kim, Hye Rim Chung, Han Young Lim, Jong Gyu Kim, Suyeon Kim, Se Keun Ku, Hye-Jin Kim, Heebal Ryu, Sangryeol Choi, Sang Ho Lee, Ju-Hoon |
author_facet | Lee, Dong-Hoon Kim, Hye Rim Chung, Han Young Lim, Jong Gyu Kim, Suyeon Kim, Se Keun Ku, Hye-Jin Kim, Heebal Ryu, Sangryeol Choi, Sang Ho Lee, Ju-Hoon |
author_sort | Lee, Dong-Hoon |
collection | PubMed |
description | Due to abundant contamination in various foods, the pathogenesis of Bacillus cereus has been widely studied in physiological and molecular level. B. cereus FORC_005 was isolated from a Korean side dish, soy sauce braised fish-cake with quail-egg in South Korea. While 21 complete genome sequences of B. cereus has been announced to date, this strain was completely sequenced, analyzed, and compared with other complete genome sequences of B. cereus to elucidate the distinct pathogenic features of a strain isolated in South Korea. The genomic DNA containing a circular chromosome consists of 5,349,617-bp with a GC content of 35.29 %. It was predicted to have 5170 open reading frames, 106 tRNA genes, and 42 rRNA genes. Among the predicted ORFs, 3892 ORFs were annotated to encode functional proteins (75.28 %) and 1278 ORFs were predicted to encode hypothetical proteins (748 conserved and 530 non-conserved hypothetical proteins). This genome information of B. cereus FORC_005 would extend our understanding of its pathogenesis in genomic level for efficient control of its contamination in foods and further food poisoning. |
format | Online Article Text |
id | pubmed-4642778 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-46427782015-11-13 Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg Lee, Dong-Hoon Kim, Hye Rim Chung, Han Young Lim, Jong Gyu Kim, Suyeon Kim, Se Keun Ku, Hye-Jin Kim, Heebal Ryu, Sangryeol Choi, Sang Ho Lee, Ju-Hoon Stand Genomic Sci Short Genome Report Due to abundant contamination in various foods, the pathogenesis of Bacillus cereus has been widely studied in physiological and molecular level. B. cereus FORC_005 was isolated from a Korean side dish, soy sauce braised fish-cake with quail-egg in South Korea. While 21 complete genome sequences of B. cereus has been announced to date, this strain was completely sequenced, analyzed, and compared with other complete genome sequences of B. cereus to elucidate the distinct pathogenic features of a strain isolated in South Korea. The genomic DNA containing a circular chromosome consists of 5,349,617-bp with a GC content of 35.29 %. It was predicted to have 5170 open reading frames, 106 tRNA genes, and 42 rRNA genes. Among the predicted ORFs, 3892 ORFs were annotated to encode functional proteins (75.28 %) and 1278 ORFs were predicted to encode hypothetical proteins (748 conserved and 530 non-conserved hypothetical proteins). This genome information of B. cereus FORC_005 would extend our understanding of its pathogenesis in genomic level for efficient control of its contamination in foods and further food poisoning. BioMed Central 2015-11-11 /pmc/articles/PMC4642778/ /pubmed/26566422 http://dx.doi.org/10.1186/s40793-015-0094-x Text en © Lee et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Short Genome Report Lee, Dong-Hoon Kim, Hye Rim Chung, Han Young Lim, Jong Gyu Kim, Suyeon Kim, Se Keun Ku, Hye-Jin Kim, Heebal Ryu, Sangryeol Choi, Sang Ho Lee, Ju-Hoon Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg |
title | Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg |
title_full | Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg |
title_fullStr | Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg |
title_full_unstemmed | Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg |
title_short | Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg |
title_sort | complete genome sequence of bacillus cereus forc_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg |
topic | Short Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642778/ https://www.ncbi.nlm.nih.gov/pubmed/26566422 http://dx.doi.org/10.1186/s40793-015-0094-x |
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