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Development of Lentivirus-Based Reference Materials for Ebola Virus Nucleic Acid Amplification Technology-Based Assays

The 2013-present Ebola virus outbreak in Western Africa has prompted the production of many diagnostic assays, mostly based on nucleic acid amplification technologies (NAT). The calibration and performance assessment of established assays and those under evaluation requires reference materials that...

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Autores principales: Mattiuzzo, Giada, Ashall, James, Doris, Kathryn S., MacLellan-Gibson, Kirsty, Nicolson, Carolyn, Wilkinson, Dianna E., Harvey, Ruth, Almond, Neil, Anderson, Robert, Efstathiou, Stacey, Minor, Philip D., Page, Mark
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642882/
https://www.ncbi.nlm.nih.gov/pubmed/26562415
http://dx.doi.org/10.1371/journal.pone.0142751
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author Mattiuzzo, Giada
Ashall, James
Doris, Kathryn S.
MacLellan-Gibson, Kirsty
Nicolson, Carolyn
Wilkinson, Dianna E.
Harvey, Ruth
Almond, Neil
Anderson, Robert
Efstathiou, Stacey
Minor, Philip D.
Page, Mark
author_facet Mattiuzzo, Giada
Ashall, James
Doris, Kathryn S.
MacLellan-Gibson, Kirsty
Nicolson, Carolyn
Wilkinson, Dianna E.
Harvey, Ruth
Almond, Neil
Anderson, Robert
Efstathiou, Stacey
Minor, Philip D.
Page, Mark
author_sort Mattiuzzo, Giada
collection PubMed
description The 2013-present Ebola virus outbreak in Western Africa has prompted the production of many diagnostic assays, mostly based on nucleic acid amplification technologies (NAT). The calibration and performance assessment of established assays and those under evaluation requires reference materials that can be used in parallel with the clinical sample to standardise or control for every step of the procedure, from extraction to the final qualitative/quantitative result. We have developed safe and stable Ebola virus RNA reference materials by encapsidating anti sense viral RNA into HIV-1-like particles. The lentiviral particles are replication-deficient and non-infectious due to the lack of HIV-1 genes and Envelope protein. Ebola virus genes were subcloned for encapsidation into two lentiviral preparations, one containing NP-VP35-GP and the other VP40 and L RNA. Each reference material was formulated as a high-titre standard for use as a calibrator for secondary or internal standards, and a 10,000-fold lower titre preparation to serve as an in-run control. The preparations have been freeze-dried to maximise stability. These HIV-Ebola virus RNA reference materials were suitable for use with in-house and commercial quantitative RT-PCR assays and with digital RT-PCR. The HIV-Ebola virus RNA reference materials are stable at up to 37°C for two weeks, allowing the shipment of the material worldwide at ambient temperature. These results support further evaluation of the HIV-Ebola virus RNA reference materials as part of an International collaborative study for the establishment of the 1(st) International Standard for Ebola virus RNA.
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spelling pubmed-46428822015-11-18 Development of Lentivirus-Based Reference Materials for Ebola Virus Nucleic Acid Amplification Technology-Based Assays Mattiuzzo, Giada Ashall, James Doris, Kathryn S. MacLellan-Gibson, Kirsty Nicolson, Carolyn Wilkinson, Dianna E. Harvey, Ruth Almond, Neil Anderson, Robert Efstathiou, Stacey Minor, Philip D. Page, Mark PLoS One Research Article The 2013-present Ebola virus outbreak in Western Africa has prompted the production of many diagnostic assays, mostly based on nucleic acid amplification technologies (NAT). The calibration and performance assessment of established assays and those under evaluation requires reference materials that can be used in parallel with the clinical sample to standardise or control for every step of the procedure, from extraction to the final qualitative/quantitative result. We have developed safe and stable Ebola virus RNA reference materials by encapsidating anti sense viral RNA into HIV-1-like particles. The lentiviral particles are replication-deficient and non-infectious due to the lack of HIV-1 genes and Envelope protein. Ebola virus genes were subcloned for encapsidation into two lentiviral preparations, one containing NP-VP35-GP and the other VP40 and L RNA. Each reference material was formulated as a high-titre standard for use as a calibrator for secondary or internal standards, and a 10,000-fold lower titre preparation to serve as an in-run control. The preparations have been freeze-dried to maximise stability. These HIV-Ebola virus RNA reference materials were suitable for use with in-house and commercial quantitative RT-PCR assays and with digital RT-PCR. The HIV-Ebola virus RNA reference materials are stable at up to 37°C for two weeks, allowing the shipment of the material worldwide at ambient temperature. These results support further evaluation of the HIV-Ebola virus RNA reference materials as part of an International collaborative study for the establishment of the 1(st) International Standard for Ebola virus RNA. Public Library of Science 2015-11-12 /pmc/articles/PMC4642882/ /pubmed/26562415 http://dx.doi.org/10.1371/journal.pone.0142751 Text en © 2015 Mattiuzzo et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Mattiuzzo, Giada
Ashall, James
Doris, Kathryn S.
MacLellan-Gibson, Kirsty
Nicolson, Carolyn
Wilkinson, Dianna E.
Harvey, Ruth
Almond, Neil
Anderson, Robert
Efstathiou, Stacey
Minor, Philip D.
Page, Mark
Development of Lentivirus-Based Reference Materials for Ebola Virus Nucleic Acid Amplification Technology-Based Assays
title Development of Lentivirus-Based Reference Materials for Ebola Virus Nucleic Acid Amplification Technology-Based Assays
title_full Development of Lentivirus-Based Reference Materials for Ebola Virus Nucleic Acid Amplification Technology-Based Assays
title_fullStr Development of Lentivirus-Based Reference Materials for Ebola Virus Nucleic Acid Amplification Technology-Based Assays
title_full_unstemmed Development of Lentivirus-Based Reference Materials for Ebola Virus Nucleic Acid Amplification Technology-Based Assays
title_short Development of Lentivirus-Based Reference Materials for Ebola Virus Nucleic Acid Amplification Technology-Based Assays
title_sort development of lentivirus-based reference materials for ebola virus nucleic acid amplification technology-based assays
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4642882/
https://www.ncbi.nlm.nih.gov/pubmed/26562415
http://dx.doi.org/10.1371/journal.pone.0142751
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