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“Newton’s cradle” proton relay with amide–imidic acid tautomerization in inverting cellulase visualized by neutron crystallography
Hydrolysis of carbohydrates is a major bioreaction in nature, catalyzed by glycoside hydrolases (GHs). We used neutron diffraction and high-resolution x-ray diffraction analyses to investigate the hydrogen bond network in inverting cellulase PcCel45A, which is an endoglucanase belonging to subfamily...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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American Association for the Advancement of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4643802/ https://www.ncbi.nlm.nih.gov/pubmed/26601228 http://dx.doi.org/10.1126/sciadv.1500263 |
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author | Nakamura, Akihiko Ishida, Takuya Kusaka, Katsuhiro Yamada, Taro Fushinobu, Shinya Tanaka, Ichiro Kaneko, Satoshi Ohta, Kazunori Tanaka, Hiroaki Inaka, Koji Higuchi, Yoshiki Niimura, Nobuo Samejima, Masahiro Igarashi, Kiyohiko |
author_facet | Nakamura, Akihiko Ishida, Takuya Kusaka, Katsuhiro Yamada, Taro Fushinobu, Shinya Tanaka, Ichiro Kaneko, Satoshi Ohta, Kazunori Tanaka, Hiroaki Inaka, Koji Higuchi, Yoshiki Niimura, Nobuo Samejima, Masahiro Igarashi, Kiyohiko |
author_sort | Nakamura, Akihiko |
collection | PubMed |
description | Hydrolysis of carbohydrates is a major bioreaction in nature, catalyzed by glycoside hydrolases (GHs). We used neutron diffraction and high-resolution x-ray diffraction analyses to investigate the hydrogen bond network in inverting cellulase PcCel45A, which is an endoglucanase belonging to subfamily C of GH family 45, isolated from the basidiomycete Phanerochaete chrysosporium. Examination of the enzyme and enzyme-ligand structures indicates a key role of multiple tautomerizations of asparagine residues and peptide bonds, which are finally connected to the other catalytic residue via typical side-chain hydrogen bonds, in forming the “Newton’s cradle”–like proton relay pathway of the catalytic cycle. Amide–imidic acid tautomerization of asparagine has not been taken into account in recent molecular dynamics simulations of not only cellulases but also general enzyme catalysis, and it may be necessary to reconsider our interpretation of many enzymatic reactions. |
format | Online Article Text |
id | pubmed-4643802 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | American Association for the Advancement of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-46438022015-11-23 “Newton’s cradle” proton relay with amide–imidic acid tautomerization in inverting cellulase visualized by neutron crystallography Nakamura, Akihiko Ishida, Takuya Kusaka, Katsuhiro Yamada, Taro Fushinobu, Shinya Tanaka, Ichiro Kaneko, Satoshi Ohta, Kazunori Tanaka, Hiroaki Inaka, Koji Higuchi, Yoshiki Niimura, Nobuo Samejima, Masahiro Igarashi, Kiyohiko Sci Adv Research Articles Hydrolysis of carbohydrates is a major bioreaction in nature, catalyzed by glycoside hydrolases (GHs). We used neutron diffraction and high-resolution x-ray diffraction analyses to investigate the hydrogen bond network in inverting cellulase PcCel45A, which is an endoglucanase belonging to subfamily C of GH family 45, isolated from the basidiomycete Phanerochaete chrysosporium. Examination of the enzyme and enzyme-ligand structures indicates a key role of multiple tautomerizations of asparagine residues and peptide bonds, which are finally connected to the other catalytic residue via typical side-chain hydrogen bonds, in forming the “Newton’s cradle”–like proton relay pathway of the catalytic cycle. Amide–imidic acid tautomerization of asparagine has not been taken into account in recent molecular dynamics simulations of not only cellulases but also general enzyme catalysis, and it may be necessary to reconsider our interpretation of many enzymatic reactions. American Association for the Advancement of Science 2015-08-21 /pmc/articles/PMC4643802/ /pubmed/26601228 http://dx.doi.org/10.1126/sciadv.1500263 Text en Copyright © 2015, The Authors http://creativecommons.org/licenses/by-nc/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (http://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited. |
spellingShingle | Research Articles Nakamura, Akihiko Ishida, Takuya Kusaka, Katsuhiro Yamada, Taro Fushinobu, Shinya Tanaka, Ichiro Kaneko, Satoshi Ohta, Kazunori Tanaka, Hiroaki Inaka, Koji Higuchi, Yoshiki Niimura, Nobuo Samejima, Masahiro Igarashi, Kiyohiko “Newton’s cradle” proton relay with amide–imidic acid tautomerization in inverting cellulase visualized by neutron crystallography |
title | “Newton’s cradle” proton relay with amide–imidic acid tautomerization in inverting cellulase visualized by neutron crystallography |
title_full | “Newton’s cradle” proton relay with amide–imidic acid tautomerization in inverting cellulase visualized by neutron crystallography |
title_fullStr | “Newton’s cradle” proton relay with amide–imidic acid tautomerization in inverting cellulase visualized by neutron crystallography |
title_full_unstemmed | “Newton’s cradle” proton relay with amide–imidic acid tautomerization in inverting cellulase visualized by neutron crystallography |
title_short | “Newton’s cradle” proton relay with amide–imidic acid tautomerization in inverting cellulase visualized by neutron crystallography |
title_sort | “newton’s cradle” proton relay with amide–imidic acid tautomerization in inverting cellulase visualized by neutron crystallography |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4643802/ https://www.ncbi.nlm.nih.gov/pubmed/26601228 http://dx.doi.org/10.1126/sciadv.1500263 |
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