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Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov.
Strain FF8(T) (= CSUR P860 = DSM 28259) was isolated in Dakar, Senegal, from the urine of a 65-year-old man with acute cystitis. This strain shows a similarity of sequence of 16S rRNA of 98.38% with Weeksella virosa, and its GenBank accession numbers are HG931340 and CCMH00000000. Matrix-assisted la...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4644262/ https://www.ncbi.nlm.nih.gov/pubmed/26649182 http://dx.doi.org/10.1016/j.nmni.2015.09.013 |
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author | Sankar, S.A. Lo, C.I. Fall, B. Sambe-Ba, B. Mediannikov, O. Diallo, I. Labas, N. Faye, N. Wade, B. Raoult, D. Fournier, P.-E. Fenollar, F. |
author_facet | Sankar, S.A. Lo, C.I. Fall, B. Sambe-Ba, B. Mediannikov, O. Diallo, I. Labas, N. Faye, N. Wade, B. Raoult, D. Fournier, P.-E. Fenollar, F. |
author_sort | Sankar, S.A. |
collection | PubMed |
description | Strain FF8(T) (= CSUR P860 = DSM 28259) was isolated in Dakar, Senegal, from the urine of a 65-year-old man with acute cystitis. This strain shows a similarity of sequence of 16S rRNA of 98.38% with Weeksella virosa, and its GenBank accession numbers are HG931340 and CCMH00000000. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis had a poor score, ranging from 1.32 to 1.56, that did not allow identification of the bacterium. Using a polyphasic study made of phenotypic and genomic analyses, strain FF8(T) was a Gram-negative, aerobic rod and a member of the family Flavobacteriaceae. The sequenced genome is 2 562 781 bp with one chromosome but no plasmid. It exhibits a G + C content of 35.9% and contains 2390 protein-coding and 56 RNA genes, including a complete rRNA operon. On the basis of these data, we propose the creation of Weeksella massiliensis sp. nov. |
format | Online Article Text |
id | pubmed-4644262 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-46442622015-12-08 Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov. Sankar, S.A. Lo, C.I. Fall, B. Sambe-Ba, B. Mediannikov, O. Diallo, I. Labas, N. Faye, N. Wade, B. Raoult, D. Fournier, P.-E. Fenollar, F. New Microbes New Infect New Microbes in Humans Strain FF8(T) (= CSUR P860 = DSM 28259) was isolated in Dakar, Senegal, from the urine of a 65-year-old man with acute cystitis. This strain shows a similarity of sequence of 16S rRNA of 98.38% with Weeksella virosa, and its GenBank accession numbers are HG931340 and CCMH00000000. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis had a poor score, ranging from 1.32 to 1.56, that did not allow identification of the bacterium. Using a polyphasic study made of phenotypic and genomic analyses, strain FF8(T) was a Gram-negative, aerobic rod and a member of the family Flavobacteriaceae. The sequenced genome is 2 562 781 bp with one chromosome but no plasmid. It exhibits a G + C content of 35.9% and contains 2390 protein-coding and 56 RNA genes, including a complete rRNA operon. On the basis of these data, we propose the creation of Weeksella massiliensis sp. nov. Elsevier 2015-10-02 /pmc/articles/PMC4644262/ /pubmed/26649182 http://dx.doi.org/10.1016/j.nmni.2015.09.013 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | New Microbes in Humans Sankar, S.A. Lo, C.I. Fall, B. Sambe-Ba, B. Mediannikov, O. Diallo, I. Labas, N. Faye, N. Wade, B. Raoult, D. Fournier, P.-E. Fenollar, F. Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov. |
title | Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov. |
title_full | Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov. |
title_fullStr | Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov. |
title_full_unstemmed | Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov. |
title_short | Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov. |
title_sort | noncontiguous finished genome sequence and description of weeksella massiliensis sp. nov. |
topic | New Microbes in Humans |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4644262/ https://www.ncbi.nlm.nih.gov/pubmed/26649182 http://dx.doi.org/10.1016/j.nmni.2015.09.013 |
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