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Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov.

Strain FF8(T) (= CSUR P860 = DSM 28259) was isolated in Dakar, Senegal, from the urine of a 65-year-old man with acute cystitis. This strain shows a similarity of sequence of 16S rRNA of 98.38% with Weeksella virosa, and its GenBank accession numbers are HG931340 and CCMH00000000. Matrix-assisted la...

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Autores principales: Sankar, S.A., Lo, C.I., Fall, B., Sambe-Ba, B., Mediannikov, O., Diallo, I., Labas, N., Faye, N., Wade, B., Raoult, D., Fournier, P.-E., Fenollar, F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4644262/
https://www.ncbi.nlm.nih.gov/pubmed/26649182
http://dx.doi.org/10.1016/j.nmni.2015.09.013
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author Sankar, S.A.
Lo, C.I.
Fall, B.
Sambe-Ba, B.
Mediannikov, O.
Diallo, I.
Labas, N.
Faye, N.
Wade, B.
Raoult, D.
Fournier, P.-E.
Fenollar, F.
author_facet Sankar, S.A.
Lo, C.I.
Fall, B.
Sambe-Ba, B.
Mediannikov, O.
Diallo, I.
Labas, N.
Faye, N.
Wade, B.
Raoult, D.
Fournier, P.-E.
Fenollar, F.
author_sort Sankar, S.A.
collection PubMed
description Strain FF8(T) (= CSUR P860 = DSM 28259) was isolated in Dakar, Senegal, from the urine of a 65-year-old man with acute cystitis. This strain shows a similarity of sequence of 16S rRNA of 98.38% with Weeksella virosa, and its GenBank accession numbers are HG931340 and CCMH00000000. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis had a poor score, ranging from 1.32 to 1.56, that did not allow identification of the bacterium. Using a polyphasic study made of phenotypic and genomic analyses, strain FF8(T) was a Gram-negative, aerobic rod and a member of the family Flavobacteriaceae. The sequenced genome is 2 562 781 bp with one chromosome but no plasmid. It exhibits a G + C content of 35.9% and contains 2390 protein-coding and 56 RNA genes, including a complete rRNA operon. On the basis of these data, we propose the creation of Weeksella massiliensis sp. nov.
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spelling pubmed-46442622015-12-08 Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov. Sankar, S.A. Lo, C.I. Fall, B. Sambe-Ba, B. Mediannikov, O. Diallo, I. Labas, N. Faye, N. Wade, B. Raoult, D. Fournier, P.-E. Fenollar, F. New Microbes New Infect New Microbes in Humans Strain FF8(T) (= CSUR P860 = DSM 28259) was isolated in Dakar, Senegal, from the urine of a 65-year-old man with acute cystitis. This strain shows a similarity of sequence of 16S rRNA of 98.38% with Weeksella virosa, and its GenBank accession numbers are HG931340 and CCMH00000000. Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry analysis had a poor score, ranging from 1.32 to 1.56, that did not allow identification of the bacterium. Using a polyphasic study made of phenotypic and genomic analyses, strain FF8(T) was a Gram-negative, aerobic rod and a member of the family Flavobacteriaceae. The sequenced genome is 2 562 781 bp with one chromosome but no plasmid. It exhibits a G + C content of 35.9% and contains 2390 protein-coding and 56 RNA genes, including a complete rRNA operon. On the basis of these data, we propose the creation of Weeksella massiliensis sp. nov. Elsevier 2015-10-02 /pmc/articles/PMC4644262/ /pubmed/26649182 http://dx.doi.org/10.1016/j.nmni.2015.09.013 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle New Microbes in Humans
Sankar, S.A.
Lo, C.I.
Fall, B.
Sambe-Ba, B.
Mediannikov, O.
Diallo, I.
Labas, N.
Faye, N.
Wade, B.
Raoult, D.
Fournier, P.-E.
Fenollar, F.
Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov.
title Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov.
title_full Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov.
title_fullStr Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov.
title_full_unstemmed Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov.
title_short Noncontiguous finished genome sequence and description of Weeksella massiliensis sp. nov.
title_sort noncontiguous finished genome sequence and description of weeksella massiliensis sp. nov.
topic New Microbes in Humans
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4644262/
https://www.ncbi.nlm.nih.gov/pubmed/26649182
http://dx.doi.org/10.1016/j.nmni.2015.09.013
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