Cargando…

Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T)

Strain K22(T) is the type species of the recently- described genus Pyrinomonas, in subdivision 4 of the phylum Acidobacteria (Int J Syst Evol Micr. 2014; 64(1):220–7). It was isolated from geothermally-heated soil from Mt. Ngauruhoe, New Zealand, using low-nutrient medium. P. methylaliphatogenes K22...

Descripción completa

Detalles Bibliográficos
Autores principales: Lee, Kevin C. Y., Morgan, Xochitl C., Power, Jean F., Dunfield, Peter F., Huttenhower, Curtis, Stott, Matthew B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4644332/
https://www.ncbi.nlm.nih.gov/pubmed/26568784
http://dx.doi.org/10.1186/s40793-015-0099-5
_version_ 1782400659168952320
author Lee, Kevin C. Y.
Morgan, Xochitl C.
Power, Jean F.
Dunfield, Peter F.
Huttenhower, Curtis
Stott, Matthew B.
author_facet Lee, Kevin C. Y.
Morgan, Xochitl C.
Power, Jean F.
Dunfield, Peter F.
Huttenhower, Curtis
Stott, Matthew B.
author_sort Lee, Kevin C. Y.
collection PubMed
description Strain K22(T) is the type species of the recently- described genus Pyrinomonas, in subdivision 4 of the phylum Acidobacteria (Int J Syst Evol Micr. 2014; 64(1):220–7). It was isolated from geothermally-heated soil from Mt. Ngauruhoe, New Zealand, using low-nutrient medium. P. methylaliphatogenes K22(T) has a chemoheterotrophic metabolism; it can hydrolyze a limited range of simple carbohydrates and polypeptides. Its cell membrane is dominated by iso-branching fatty acids, and up to 40 % of its lipid content is membrane-spanning and ether lipids. It is obligately aerobic, thermophilic, moderately acidophilic, and non-spore-forming. The 3,788,560 bp genome of P. methylaliphatogenes K22(T) has a G + C content of 59.36 % and contains 3,189 protein-encoding and 55 non-coding RNA genes. Genomic analysis was consistent with nutritional requirements; in particular, the identified transporter classes reflect the oligotrophic nature of this strain. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0099-5) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-4644332
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-46443322015-11-15 Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T) Lee, Kevin C. Y. Morgan, Xochitl C. Power, Jean F. Dunfield, Peter F. Huttenhower, Curtis Stott, Matthew B. Stand Genomic Sci Extended Genome Report Strain K22(T) is the type species of the recently- described genus Pyrinomonas, in subdivision 4 of the phylum Acidobacteria (Int J Syst Evol Micr. 2014; 64(1):220–7). It was isolated from geothermally-heated soil from Mt. Ngauruhoe, New Zealand, using low-nutrient medium. P. methylaliphatogenes K22(T) has a chemoheterotrophic metabolism; it can hydrolyze a limited range of simple carbohydrates and polypeptides. Its cell membrane is dominated by iso-branching fatty acids, and up to 40 % of its lipid content is membrane-spanning and ether lipids. It is obligately aerobic, thermophilic, moderately acidophilic, and non-spore-forming. The 3,788,560 bp genome of P. methylaliphatogenes K22(T) has a G + C content of 59.36 % and contains 3,189 protein-encoding and 55 non-coding RNA genes. Genomic analysis was consistent with nutritional requirements; in particular, the identified transporter classes reflect the oligotrophic nature of this strain. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s40793-015-0099-5) contains supplementary material, which is available to authorized users. BioMed Central 2015-11-14 /pmc/articles/PMC4644332/ /pubmed/26568784 http://dx.doi.org/10.1186/s40793-015-0099-5 Text en © Lee et al. 2015 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Extended Genome Report
Lee, Kevin C. Y.
Morgan, Xochitl C.
Power, Jean F.
Dunfield, Peter F.
Huttenhower, Curtis
Stott, Matthew B.
Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T)
title Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T)
title_full Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T)
title_fullStr Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T)
title_full_unstemmed Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T)
title_short Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T)
title_sort complete genome sequence of the thermophilic acidobacteria, pyrinomonas methylaliphatogenes type strain k22(t)
topic Extended Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4644332/
https://www.ncbi.nlm.nih.gov/pubmed/26568784
http://dx.doi.org/10.1186/s40793-015-0099-5
work_keys_str_mv AT leekevincy completegenomesequenceofthethermophilicacidobacteriapyrinomonasmethylaliphatogenestypestraink22t
AT morganxochitlc completegenomesequenceofthethermophilicacidobacteriapyrinomonasmethylaliphatogenestypestraink22t
AT powerjeanf completegenomesequenceofthethermophilicacidobacteriapyrinomonasmethylaliphatogenestypestraink22t
AT dunfieldpeterf completegenomesequenceofthethermophilicacidobacteriapyrinomonasmethylaliphatogenestypestraink22t
AT huttenhowercurtis completegenomesequenceofthethermophilicacidobacteriapyrinomonasmethylaliphatogenestypestraink22t
AT stottmatthewb completegenomesequenceofthethermophilicacidobacteriapyrinomonasmethylaliphatogenestypestraink22t