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CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis

Various disciplines are trying to solve one of the most noteworthy queries and broadly used concepts in biology, essentiality. Centrality is a primary index and a promising method for identifying essential nodes, particularly in biological networks. The newly created CentiServer is a comprehensive o...

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Detalles Bibliográficos
Autores principales: Jalili, Mahdi, Salehzadeh-Yazdi, Ali, Asgari, Yazdan, Arab, Seyed Shahriar, Yaghmaie, Marjan, Ghavamzadeh, Ardeshir, Alimoghaddam, Kamran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4646361/
https://www.ncbi.nlm.nih.gov/pubmed/26571275
http://dx.doi.org/10.1371/journal.pone.0143111
Descripción
Sumario:Various disciplines are trying to solve one of the most noteworthy queries and broadly used concepts in biology, essentiality. Centrality is a primary index and a promising method for identifying essential nodes, particularly in biological networks. The newly created CentiServer is a comprehensive online resource that provides over 110 definitions of different centrality indices, their computational methods, and algorithms in the form of an encyclopedia. In addition, CentiServer allows users to calculate 55 centralities with the help of an interactive web-based application tool and provides a numerical result as a comma separated value (csv) file format or a mapped graphical format as a graph modeling language (GML) file. The standalone version of this application has been developed in the form of an R package. The web-based application (CentiServer) and R package (centiserve) are freely available at http://www.centiserver.org/