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CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis
Various disciplines are trying to solve one of the most noteworthy queries and broadly used concepts in biology, essentiality. Centrality is a primary index and a promising method for identifying essential nodes, particularly in biological networks. The newly created CentiServer is a comprehensive o...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4646361/ https://www.ncbi.nlm.nih.gov/pubmed/26571275 http://dx.doi.org/10.1371/journal.pone.0143111 |
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author | Jalili, Mahdi Salehzadeh-Yazdi, Ali Asgari, Yazdan Arab, Seyed Shahriar Yaghmaie, Marjan Ghavamzadeh, Ardeshir Alimoghaddam, Kamran |
author_facet | Jalili, Mahdi Salehzadeh-Yazdi, Ali Asgari, Yazdan Arab, Seyed Shahriar Yaghmaie, Marjan Ghavamzadeh, Ardeshir Alimoghaddam, Kamran |
author_sort | Jalili, Mahdi |
collection | PubMed |
description | Various disciplines are trying to solve one of the most noteworthy queries and broadly used concepts in biology, essentiality. Centrality is a primary index and a promising method for identifying essential nodes, particularly in biological networks. The newly created CentiServer is a comprehensive online resource that provides over 110 definitions of different centrality indices, their computational methods, and algorithms in the form of an encyclopedia. In addition, CentiServer allows users to calculate 55 centralities with the help of an interactive web-based application tool and provides a numerical result as a comma separated value (csv) file format or a mapped graphical format as a graph modeling language (GML) file. The standalone version of this application has been developed in the form of an R package. The web-based application (CentiServer) and R package (centiserve) are freely available at http://www.centiserver.org/ |
format | Online Article Text |
id | pubmed-4646361 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-46463612015-11-25 CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis Jalili, Mahdi Salehzadeh-Yazdi, Ali Asgari, Yazdan Arab, Seyed Shahriar Yaghmaie, Marjan Ghavamzadeh, Ardeshir Alimoghaddam, Kamran PLoS One Research Article Various disciplines are trying to solve one of the most noteworthy queries and broadly used concepts in biology, essentiality. Centrality is a primary index and a promising method for identifying essential nodes, particularly in biological networks. The newly created CentiServer is a comprehensive online resource that provides over 110 definitions of different centrality indices, their computational methods, and algorithms in the form of an encyclopedia. In addition, CentiServer allows users to calculate 55 centralities with the help of an interactive web-based application tool and provides a numerical result as a comma separated value (csv) file format or a mapped graphical format as a graph modeling language (GML) file. The standalone version of this application has been developed in the form of an R package. The web-based application (CentiServer) and R package (centiserve) are freely available at http://www.centiserver.org/ Public Library of Science 2015-11-16 /pmc/articles/PMC4646361/ /pubmed/26571275 http://dx.doi.org/10.1371/journal.pone.0143111 Text en © 2015 Jalili et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Jalili, Mahdi Salehzadeh-Yazdi, Ali Asgari, Yazdan Arab, Seyed Shahriar Yaghmaie, Marjan Ghavamzadeh, Ardeshir Alimoghaddam, Kamran CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis |
title | CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis |
title_full | CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis |
title_fullStr | CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis |
title_full_unstemmed | CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis |
title_short | CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis |
title_sort | centiserver: a comprehensive resource, web-based application and r package for centrality analysis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4646361/ https://www.ncbi.nlm.nih.gov/pubmed/26571275 http://dx.doi.org/10.1371/journal.pone.0143111 |
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