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CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis

Various disciplines are trying to solve one of the most noteworthy queries and broadly used concepts in biology, essentiality. Centrality is a primary index and a promising method for identifying essential nodes, particularly in biological networks. The newly created CentiServer is a comprehensive o...

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Autores principales: Jalili, Mahdi, Salehzadeh-Yazdi, Ali, Asgari, Yazdan, Arab, Seyed Shahriar, Yaghmaie, Marjan, Ghavamzadeh, Ardeshir, Alimoghaddam, Kamran
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4646361/
https://www.ncbi.nlm.nih.gov/pubmed/26571275
http://dx.doi.org/10.1371/journal.pone.0143111
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author Jalili, Mahdi
Salehzadeh-Yazdi, Ali
Asgari, Yazdan
Arab, Seyed Shahriar
Yaghmaie, Marjan
Ghavamzadeh, Ardeshir
Alimoghaddam, Kamran
author_facet Jalili, Mahdi
Salehzadeh-Yazdi, Ali
Asgari, Yazdan
Arab, Seyed Shahriar
Yaghmaie, Marjan
Ghavamzadeh, Ardeshir
Alimoghaddam, Kamran
author_sort Jalili, Mahdi
collection PubMed
description Various disciplines are trying to solve one of the most noteworthy queries and broadly used concepts in biology, essentiality. Centrality is a primary index and a promising method for identifying essential nodes, particularly in biological networks. The newly created CentiServer is a comprehensive online resource that provides over 110 definitions of different centrality indices, their computational methods, and algorithms in the form of an encyclopedia. In addition, CentiServer allows users to calculate 55 centralities with the help of an interactive web-based application tool and provides a numerical result as a comma separated value (csv) file format or a mapped graphical format as a graph modeling language (GML) file. The standalone version of this application has been developed in the form of an R package. The web-based application (CentiServer) and R package (centiserve) are freely available at http://www.centiserver.org/
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spelling pubmed-46463612015-11-25 CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis Jalili, Mahdi Salehzadeh-Yazdi, Ali Asgari, Yazdan Arab, Seyed Shahriar Yaghmaie, Marjan Ghavamzadeh, Ardeshir Alimoghaddam, Kamran PLoS One Research Article Various disciplines are trying to solve one of the most noteworthy queries and broadly used concepts in biology, essentiality. Centrality is a primary index and a promising method for identifying essential nodes, particularly in biological networks. The newly created CentiServer is a comprehensive online resource that provides over 110 definitions of different centrality indices, their computational methods, and algorithms in the form of an encyclopedia. In addition, CentiServer allows users to calculate 55 centralities with the help of an interactive web-based application tool and provides a numerical result as a comma separated value (csv) file format or a mapped graphical format as a graph modeling language (GML) file. The standalone version of this application has been developed in the form of an R package. The web-based application (CentiServer) and R package (centiserve) are freely available at http://www.centiserver.org/ Public Library of Science 2015-11-16 /pmc/articles/PMC4646361/ /pubmed/26571275 http://dx.doi.org/10.1371/journal.pone.0143111 Text en © 2015 Jalili et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Jalili, Mahdi
Salehzadeh-Yazdi, Ali
Asgari, Yazdan
Arab, Seyed Shahriar
Yaghmaie, Marjan
Ghavamzadeh, Ardeshir
Alimoghaddam, Kamran
CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis
title CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis
title_full CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis
title_fullStr CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis
title_full_unstemmed CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis
title_short CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis
title_sort centiserver: a comprehensive resource, web-based application and r package for centrality analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4646361/
https://www.ncbi.nlm.nih.gov/pubmed/26571275
http://dx.doi.org/10.1371/journal.pone.0143111
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