Cargando…

Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

BACKGROUND: Transcriptomics reveals the existence of transcripts of different coding potential and strand orientation. Alternative splicing (AS) can yield proteins with altered number and types of functional domains, suggesting the global occurrence of transcriptional and post-transcriptional events...

Descripción completa

Detalles Bibliográficos
Autores principales:	Aghamirzaie, Delasa, Batra, Dhruv, Heath, Lenwood S., Schneider, Andrew, Grene, Ruth, Collakova, Eva
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4647491/ https://www.ncbi.nlm.nih.gov/pubmed/26572793 http://dx.doi.org/10.1186/s12864-015-2108-x

Ejemplares similares

Changes in RNA Splicing in Developing Soybean (Glycine max) Embryos
por: Aghamirzaie, Delasa, et al.
Publicado: (2013)

Metabolic and Transcriptional Reprogramming in Developing Soybean (Glycine max) Embryos
por: Collakova, Eva, et al.
Publicado: (2013)

CoSpliceNet: a framework for co-splicing network inference from transcriptomics data
por: Aghamirzaie, Delasa, et al.
Publicado: (2016)

A Machine Learning Approach to Predict Gene Regulatory Networks in Seed Development in Arabidopsis
por: Ni, Ying, et al.
Publicado: (2016)

Expresso: A database and web server for exploring the interaction of transcription factors and their target genes in Arabidopsis thaliana using ChIP-Seq peak data
por: Aghamirzaie, Delasa, et al.
Publicado: (2017)

Evidence for extensive heterotrophic metabolism, antioxidant action, and associated regulatory events during winter hardening in Sitka spruce
por: Collakova, Eva, et al.
Publicado: (2013)

Mining and visualization of microarray and metabolomic data reveal extensive cell wall remodeling during winter hardening in Sitka spruce (Picea sitchensis)
por: Grene, Ruth, et al.
Publicado: (2012)

Identification of regulatory modules in genome scale transcription regulatory networks
por: Song, Qi, et al.
Publicado: (2017)

Comparing time series transcriptome data between plants using a network module finding algorithm
por: Lee, Jiyoung, et al.
Publicado: (2019)

XcisClique: analysis of regulatory bicliques
por: Pati, Amrita, et al.
Publicado: (2006)

The statistics of identifying differentially expressed genes in Expresso and TM4: a comparison
por: Sioson, Allan A, et al.
Publicado: (2006)

Studying the Functional Genomics of Stress Responses in Loblolly Pine With the Expresso Microarray Experiment Management System
por: Heath, Lenwood S., et al.
Publicado: (2002)

Genome-wide analysis of the MYB transcription factor superfamily in soybean
por: Du, Hai, et al.
Publicado: (2012)

Genome-wide identification and evolutionary analysis of TGA transcription factors in soybean
por: Ullah, Ihteram, et al.
Publicado: (2019)

Genome-wide dissection and expression profiling of unique glyoxalase III genes in soybean reveal the differential pattern of transcriptional regulation
por: Islam, Tahmina, et al.
Publicado: (2018)

Genome-wide identification of soybean WRKY transcription factors in response to salt stress
por: Yu, Yanchong, et al.
Publicado: (2016)

CoSREM: a graph mining algorithm for the discovery of combinatorial splicing regulatory elements
por: Badr, Eman, et al.
Publicado: (2015)

Connecting genomic islands across prokaryotic and phage genomes via protein families
por: Aldaihani, Reem, et al.
Publicado: (2023)

Towards understanding paleoclimate impacts on primate de novo genes
por: Liang, Xiao, et al.
Publicado: (2023)

Adaptive group testing strategy for infectious diseases using social contact graph partitions
por: Zhang, Jingyi, et al.
Publicado: (2023)

Transcriptome-wide identification of novel circular RNAs in soybean in response to low-phosphorus stress
por: Lv, Lingling, et al.
Publicado: (2020)

Genome-wide analysis of the soybean root transcriptome reveals the impact of nitrate on alternative splicing
por: Guo, Binhui, et al.
Publicado: (2021)

Transcriptome profiling of interaction effects of soybean cyst nematodes and soybean aphids on soybean
por: Neupane, Surendra, et al.
Publicado: (2019)

Differential Gene Expression in Soybean Leaf Tissues at Late Developmental Stages under Drought Stress Revealed by Genome-Wide Transcriptome Analysis
por: Le, Dung Tien, et al.
Publicado: (2012)

Genome-wide transcriptional analysis of two soybean genotypes under dehydration and rehydration conditions
por: Chen, Li M, et al.
Publicado: (2013)

A Genome-Wide View of Transcriptional Responses during Aphis glycines Infestation in Soybean
por: Yao, Luming, et al.
Publicado: (2020)

Transcriptome Analyses Reveal Differential Transcriptional Profiles in Early- and Late-Dividing Porcine Somatic Cell Nuclear Transfer Embryos
por: Liu, Zhiguo, et al.
Publicado: (2020)

A complete theoretical framework for inferring horizontal gene transfers using partial order sets
por: Belal, Nahla A., et al.
Publicado: (2023)

Genome-wide transcriptome analysis of soybean primary root under varying water-deficit conditions
por: Song, Li, et al.
Publicado: (2016)

Depletion of Foxk transcription factors causes genome-wide transcriptional misregulation and developmental arrest in zebrafish embryos
por: Geng, Fan-Suo, et al.
Publicado: (2020)

Transcriptomic analyses of gastrulation-stage mouse embryos with differential susceptibility to alcohol
por: Boschen, Karen E., et al.
Publicado: (2021)

The cis-regulatory dynamics of embryonic development at single cell resolution
por: Cusanovich, Darren A., et al.
Publicado: (2018)

A Network of SCOP Hidden Markov Models and Its Analysis
por: Zhang, Liqing, et al.
Publicado: (2011)

Whole genome-wide transcript profiling to identify differentially expressed genes associated with seed field emergence in two soybean low phytate mutants
por: Yuan, Fengjie, et al.
Publicado: (2017)

Genome-wide transcriptome analyses of developing seeds from low and normal phytic acid soybean lines
por: Redekar, Neelam R., et al.
Publicado: (2015)

Transcriptome-Wide Identification of Reference Genes for Expression Analysis of Soybean Responses to Drought Stress along the Day
por: Marcolino-Gomes, Juliana, et al.
Publicado: (2015)

Genome Wide Transcriptome Analysis Reveals Complex Regulatory Mechanisms Underlying Phosphate Homeostasis in Soybean Nodules
por: Xue, Yingbin, et al.
Publicado: (2018)

Transcriptome Analysis of Soybean Leaf Abscission Identifies Transcriptional Regulators of Organ Polarity and Cell Fate
por: Kim, Joonyup, et al.
Publicado: (2016)

Transcriptome-Wide Detection of Differentially Expressed Coding and Non-Coding Transcripts and Their Clinical Significance in Prostate Cancer
por: Erho, Nicholas, et al.
Publicado: (2012)

Transcriptome-wide mining of the differentially expressed transcripts for natural variation of floral organ size in Physalis philadelphica
por: Wang, Li, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_mj1o28u6tg2j3jeplidml96ohl