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Rapid and retrievable recording of big data of time-lapse 3D shadow images of microbial colonies

We formerly developed an automatic colony count system based on the time-lapse shadow image analysis (TSIA). Here this system has been upgraded and applied to practical rapid decision. A microbial sample was spread on/in an agar plate with 90 mm in diameter as homogeneously as possible. We could obt...

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Autores principales: Ogawa, Hiroyuki, Nasu, Senshi, Takeshige, Motomu, Saito, Mikako, Matsuoka, Hideaki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4650366/
https://www.ncbi.nlm.nih.gov/pubmed/25975590
http://dx.doi.org/10.1038/srep10061
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author Ogawa, Hiroyuki
Nasu, Senshi
Takeshige, Motomu
Saito, Mikako
Matsuoka, Hideaki
author_facet Ogawa, Hiroyuki
Nasu, Senshi
Takeshige, Motomu
Saito, Mikako
Matsuoka, Hideaki
author_sort Ogawa, Hiroyuki
collection PubMed
description We formerly developed an automatic colony count system based on the time-lapse shadow image analysis (TSIA). Here this system has been upgraded and applied to practical rapid decision. A microbial sample was spread on/in an agar plate with 90 mm in diameter as homogeneously as possible. We could obtain the results with several strains that most of colonies appeared within a limited time span. Consequently the number of colonies reached a steady level (N(stdy)) and then unchanged until the end of long culture time to give the confirmed value (N(conf)). The equivalence of N(stdy) and N(conf) as well as the difference of times for N(stdy) and N(conf) determinations were statistically significant at p < 0.001. N(stdy) meets the requirement of practical routines treating a large number of plates. The difference of N(stdy) and N(conf), if any, may be elucidated by means of retrievable big data. Therefore N(conf) is valid for official documentation.
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spelling pubmed-46503662015-11-24 Rapid and retrievable recording of big data of time-lapse 3D shadow images of microbial colonies Ogawa, Hiroyuki Nasu, Senshi Takeshige, Motomu Saito, Mikako Matsuoka, Hideaki Sci Rep Article We formerly developed an automatic colony count system based on the time-lapse shadow image analysis (TSIA). Here this system has been upgraded and applied to practical rapid decision. A microbial sample was spread on/in an agar plate with 90 mm in diameter as homogeneously as possible. We could obtain the results with several strains that most of colonies appeared within a limited time span. Consequently the number of colonies reached a steady level (N(stdy)) and then unchanged until the end of long culture time to give the confirmed value (N(conf)). The equivalence of N(stdy) and N(conf) as well as the difference of times for N(stdy) and N(conf) determinations were statistically significant at p < 0.001. N(stdy) meets the requirement of practical routines treating a large number of plates. The difference of N(stdy) and N(conf), if any, may be elucidated by means of retrievable big data. Therefore N(conf) is valid for official documentation. Nature Publishing Group 2015-05-15 /pmc/articles/PMC4650366/ /pubmed/25975590 http://dx.doi.org/10.1038/srep10061 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Ogawa, Hiroyuki
Nasu, Senshi
Takeshige, Motomu
Saito, Mikako
Matsuoka, Hideaki
Rapid and retrievable recording of big data of time-lapse 3D shadow images of microbial colonies
title Rapid and retrievable recording of big data of time-lapse 3D shadow images of microbial colonies
title_full Rapid and retrievable recording of big data of time-lapse 3D shadow images of microbial colonies
title_fullStr Rapid and retrievable recording of big data of time-lapse 3D shadow images of microbial colonies
title_full_unstemmed Rapid and retrievable recording of big data of time-lapse 3D shadow images of microbial colonies
title_short Rapid and retrievable recording of big data of time-lapse 3D shadow images of microbial colonies
title_sort rapid and retrievable recording of big data of time-lapse 3d shadow images of microbial colonies
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4650366/
https://www.ncbi.nlm.nih.gov/pubmed/25975590
http://dx.doi.org/10.1038/srep10061
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