Cargando…

Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing

Recent years have witnessed a rapid development of network reconstruction approaches, especially for a series of methods based on compressed sensing. Although compressed-sensing based methods require much less data than conventional approaches, the compressed sensing for reconstructing heterogeneous...

Descripción completa

Detalles Bibliográficos
Autores principales: Ma, Long, Han, Xiao, Shen, Zhesi, Wang, Wen-Xu, Di, Zengru
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4654473/
https://www.ncbi.nlm.nih.gov/pubmed/26588832
http://dx.doi.org/10.1371/journal.pone.0142837
_version_ 1782402058252451840
author Ma, Long
Han, Xiao
Shen, Zhesi
Wang, Wen-Xu
Di, Zengru
author_facet Ma, Long
Han, Xiao
Shen, Zhesi
Wang, Wen-Xu
Di, Zengru
author_sort Ma, Long
collection PubMed
description Recent years have witnessed a rapid development of network reconstruction approaches, especially for a series of methods based on compressed sensing. Although compressed-sensing based methods require much less data than conventional approaches, the compressed sensing for reconstructing heterogeneous networks has not been fully exploited because of hubs. Hub neighbors require much more data to be inferred than small-degree nodes, inducing a cask effect for the reconstruction of heterogeneous networks. Here, a conflict-based method is proposed to overcome the cast effect to considerably reduce data amounts for achieving accurate reconstruction. Moreover, an element elimination method is presented to use the partially available structural information to reduce data requirements. The integration of both methods can further improve the reconstruction performance than separately using each technique. These methods are validated by exploring two evolutionary games taking place in scale-free networks, where individual information is accessible and an attempt to decode the network structure from measurable data is made. The results demonstrate that for all of the cases, much data are saved compared to that in the absence of these two methods. Due to the prevalence of heterogeneous networks in nature and society and the high cost of data acquisition in large-scale networks, these approaches have wide applications in many fields and are valuable for understanding and controlling the collective dynamics of a variety of heterogeneous networked systems.
format Online
Article
Text
id pubmed-4654473
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-46544732015-11-25 Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing Ma, Long Han, Xiao Shen, Zhesi Wang, Wen-Xu Di, Zengru PLoS One Research Article Recent years have witnessed a rapid development of network reconstruction approaches, especially for a series of methods based on compressed sensing. Although compressed-sensing based methods require much less data than conventional approaches, the compressed sensing for reconstructing heterogeneous networks has not been fully exploited because of hubs. Hub neighbors require much more data to be inferred than small-degree nodes, inducing a cask effect for the reconstruction of heterogeneous networks. Here, a conflict-based method is proposed to overcome the cast effect to considerably reduce data amounts for achieving accurate reconstruction. Moreover, an element elimination method is presented to use the partially available structural information to reduce data requirements. The integration of both methods can further improve the reconstruction performance than separately using each technique. These methods are validated by exploring two evolutionary games taking place in scale-free networks, where individual information is accessible and an attempt to decode the network structure from measurable data is made. The results demonstrate that for all of the cases, much data are saved compared to that in the absence of these two methods. Due to the prevalence of heterogeneous networks in nature and society and the high cost of data acquisition in large-scale networks, these approaches have wide applications in many fields and are valuable for understanding and controlling the collective dynamics of a variety of heterogeneous networked systems. Public Library of Science 2015-11-20 /pmc/articles/PMC4654473/ /pubmed/26588832 http://dx.doi.org/10.1371/journal.pone.0142837 Text en © 2015 Ma et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Ma, Long
Han, Xiao
Shen, Zhesi
Wang, Wen-Xu
Di, Zengru
Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing
title Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing
title_full Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing
title_fullStr Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing
title_full_unstemmed Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing
title_short Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing
title_sort efficient reconstruction of heterogeneous networks from time series via compressed sensing
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4654473/
https://www.ncbi.nlm.nih.gov/pubmed/26588832
http://dx.doi.org/10.1371/journal.pone.0142837
work_keys_str_mv AT malong efficientreconstructionofheterogeneousnetworksfromtimeseriesviacompressedsensing
AT hanxiao efficientreconstructionofheterogeneousnetworksfromtimeseriesviacompressedsensing
AT shenzhesi efficientreconstructionofheterogeneousnetworksfromtimeseriesviacompressedsensing
AT wangwenxu efficientreconstructionofheterogeneousnetworksfromtimeseriesviacompressedsensing
AT dizengru efficientreconstructionofheterogeneousnetworksfromtimeseriesviacompressedsensing