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Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing
Recent years have witnessed a rapid development of network reconstruction approaches, especially for a series of methods based on compressed sensing. Although compressed-sensing based methods require much less data than conventional approaches, the compressed sensing for reconstructing heterogeneous...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4654473/ https://www.ncbi.nlm.nih.gov/pubmed/26588832 http://dx.doi.org/10.1371/journal.pone.0142837 |
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author | Ma, Long Han, Xiao Shen, Zhesi Wang, Wen-Xu Di, Zengru |
author_facet | Ma, Long Han, Xiao Shen, Zhesi Wang, Wen-Xu Di, Zengru |
author_sort | Ma, Long |
collection | PubMed |
description | Recent years have witnessed a rapid development of network reconstruction approaches, especially for a series of methods based on compressed sensing. Although compressed-sensing based methods require much less data than conventional approaches, the compressed sensing for reconstructing heterogeneous networks has not been fully exploited because of hubs. Hub neighbors require much more data to be inferred than small-degree nodes, inducing a cask effect for the reconstruction of heterogeneous networks. Here, a conflict-based method is proposed to overcome the cast effect to considerably reduce data amounts for achieving accurate reconstruction. Moreover, an element elimination method is presented to use the partially available structural information to reduce data requirements. The integration of both methods can further improve the reconstruction performance than separately using each technique. These methods are validated by exploring two evolutionary games taking place in scale-free networks, where individual information is accessible and an attempt to decode the network structure from measurable data is made. The results demonstrate that for all of the cases, much data are saved compared to that in the absence of these two methods. Due to the prevalence of heterogeneous networks in nature and society and the high cost of data acquisition in large-scale networks, these approaches have wide applications in many fields and are valuable for understanding and controlling the collective dynamics of a variety of heterogeneous networked systems. |
format | Online Article Text |
id | pubmed-4654473 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-46544732015-11-25 Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing Ma, Long Han, Xiao Shen, Zhesi Wang, Wen-Xu Di, Zengru PLoS One Research Article Recent years have witnessed a rapid development of network reconstruction approaches, especially for a series of methods based on compressed sensing. Although compressed-sensing based methods require much less data than conventional approaches, the compressed sensing for reconstructing heterogeneous networks has not been fully exploited because of hubs. Hub neighbors require much more data to be inferred than small-degree nodes, inducing a cask effect for the reconstruction of heterogeneous networks. Here, a conflict-based method is proposed to overcome the cast effect to considerably reduce data amounts for achieving accurate reconstruction. Moreover, an element elimination method is presented to use the partially available structural information to reduce data requirements. The integration of both methods can further improve the reconstruction performance than separately using each technique. These methods are validated by exploring two evolutionary games taking place in scale-free networks, where individual information is accessible and an attempt to decode the network structure from measurable data is made. The results demonstrate that for all of the cases, much data are saved compared to that in the absence of these two methods. Due to the prevalence of heterogeneous networks in nature and society and the high cost of data acquisition in large-scale networks, these approaches have wide applications in many fields and are valuable for understanding and controlling the collective dynamics of a variety of heterogeneous networked systems. Public Library of Science 2015-11-20 /pmc/articles/PMC4654473/ /pubmed/26588832 http://dx.doi.org/10.1371/journal.pone.0142837 Text en © 2015 Ma et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Ma, Long Han, Xiao Shen, Zhesi Wang, Wen-Xu Di, Zengru Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing |
title | Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing |
title_full | Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing |
title_fullStr | Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing |
title_full_unstemmed | Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing |
title_short | Efficient Reconstruction of Heterogeneous Networks from Time Series via Compressed Sensing |
title_sort | efficient reconstruction of heterogeneous networks from time series via compressed sensing |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4654473/ https://www.ncbi.nlm.nih.gov/pubmed/26588832 http://dx.doi.org/10.1371/journal.pone.0142837 |
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