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Intra-Tumoral Heterogeneity of HER2, FGFR2, cMET and ATM in Gastric Cancer: Optimizing Personalized Healthcare through Innovative Pathological and Statistical Analysis

Current drug development efforts on gastric cancer are directed against several molecular targets driving the growth of this neoplasm. Intra-tumoral biomarker heterogeneity however, commonly observed in gastric cancer, could lead to biased selection of patients. MET, ATM, FGFR2, and HER2 were profil...

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Autores principales: Ye, Peng, Zhang, Meizhuo, Fan, Shuqiong, Zhang, Tianwei, Fu, Haihua, Su, Xinying, Gavine, Paul R., Liu, Qiang, Yin, Xiaolu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4654477/
https://www.ncbi.nlm.nih.gov/pubmed/26587992
http://dx.doi.org/10.1371/journal.pone.0143207
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author Ye, Peng
Zhang, Meizhuo
Fan, Shuqiong
Zhang, Tianwei
Fu, Haihua
Su, Xinying
Gavine, Paul R.
Liu, Qiang
Yin, Xiaolu
author_facet Ye, Peng
Zhang, Meizhuo
Fan, Shuqiong
Zhang, Tianwei
Fu, Haihua
Su, Xinying
Gavine, Paul R.
Liu, Qiang
Yin, Xiaolu
author_sort Ye, Peng
collection PubMed
description Current drug development efforts on gastric cancer are directed against several molecular targets driving the growth of this neoplasm. Intra-tumoral biomarker heterogeneity however, commonly observed in gastric cancer, could lead to biased selection of patients. MET, ATM, FGFR2, and HER2 were profiled on gastric cancer biopsy samples. An innovative pathological assessment was performed through scoring of individual biopsies against whole biopsies from a single patient to enable heterogeneity evaluation. Following this, false negative risks for each biomarker were estimated in silico. 166 gastric cancer cases with multiple biopsies from single patients were collected from Shanghai Renji Hospital. Following pre-set criteria, 56 ~ 78% cases showed low, 15 ~ 35% showed medium and 0 ~ 11% showed high heterogeneity within the biomarkers profiled. If 3 biopsies were collected from a single patient, the false negative risk for detection of the biomarkers was close to 5% (exception for FGFR2: 12.2%). When 6 biopsies were collected, the false negative risk approached 0%. Our study demonstrates the benefit of multiple biopsy sampling when considering personalized healthcare biomarker strategy, and provides an example to address the challenge of intra-tumoral biomarker heterogeneity using alternative pathological assessment and statistical methods.
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spelling pubmed-46544772015-11-25 Intra-Tumoral Heterogeneity of HER2, FGFR2, cMET and ATM in Gastric Cancer: Optimizing Personalized Healthcare through Innovative Pathological and Statistical Analysis Ye, Peng Zhang, Meizhuo Fan, Shuqiong Zhang, Tianwei Fu, Haihua Su, Xinying Gavine, Paul R. Liu, Qiang Yin, Xiaolu PLoS One Research Article Current drug development efforts on gastric cancer are directed against several molecular targets driving the growth of this neoplasm. Intra-tumoral biomarker heterogeneity however, commonly observed in gastric cancer, could lead to biased selection of patients. MET, ATM, FGFR2, and HER2 were profiled on gastric cancer biopsy samples. An innovative pathological assessment was performed through scoring of individual biopsies against whole biopsies from a single patient to enable heterogeneity evaluation. Following this, false negative risks for each biomarker were estimated in silico. 166 gastric cancer cases with multiple biopsies from single patients were collected from Shanghai Renji Hospital. Following pre-set criteria, 56 ~ 78% cases showed low, 15 ~ 35% showed medium and 0 ~ 11% showed high heterogeneity within the biomarkers profiled. If 3 biopsies were collected from a single patient, the false negative risk for detection of the biomarkers was close to 5% (exception for FGFR2: 12.2%). When 6 biopsies were collected, the false negative risk approached 0%. Our study demonstrates the benefit of multiple biopsy sampling when considering personalized healthcare biomarker strategy, and provides an example to address the challenge of intra-tumoral biomarker heterogeneity using alternative pathological assessment and statistical methods. Public Library of Science 2015-11-20 /pmc/articles/PMC4654477/ /pubmed/26587992 http://dx.doi.org/10.1371/journal.pone.0143207 Text en © 2015 Ye et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Ye, Peng
Zhang, Meizhuo
Fan, Shuqiong
Zhang, Tianwei
Fu, Haihua
Su, Xinying
Gavine, Paul R.
Liu, Qiang
Yin, Xiaolu
Intra-Tumoral Heterogeneity of HER2, FGFR2, cMET and ATM in Gastric Cancer: Optimizing Personalized Healthcare through Innovative Pathological and Statistical Analysis
title Intra-Tumoral Heterogeneity of HER2, FGFR2, cMET and ATM in Gastric Cancer: Optimizing Personalized Healthcare through Innovative Pathological and Statistical Analysis
title_full Intra-Tumoral Heterogeneity of HER2, FGFR2, cMET and ATM in Gastric Cancer: Optimizing Personalized Healthcare through Innovative Pathological and Statistical Analysis
title_fullStr Intra-Tumoral Heterogeneity of HER2, FGFR2, cMET and ATM in Gastric Cancer: Optimizing Personalized Healthcare through Innovative Pathological and Statistical Analysis
title_full_unstemmed Intra-Tumoral Heterogeneity of HER2, FGFR2, cMET and ATM in Gastric Cancer: Optimizing Personalized Healthcare through Innovative Pathological and Statistical Analysis
title_short Intra-Tumoral Heterogeneity of HER2, FGFR2, cMET and ATM in Gastric Cancer: Optimizing Personalized Healthcare through Innovative Pathological and Statistical Analysis
title_sort intra-tumoral heterogeneity of her2, fgfr2, cmet and atm in gastric cancer: optimizing personalized healthcare through innovative pathological and statistical analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4654477/
https://www.ncbi.nlm.nih.gov/pubmed/26587992
http://dx.doi.org/10.1371/journal.pone.0143207
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