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Fast segmentation of anterior segment optical coherence tomography images using graph cut
BACKGROUND: Optical coherence tomography (OCT) is a non-invasive imaging system that can be used to obtain images of the anterior segment. Automatic segmentation of these images will enable them to be used to construct patient specific biomechanical models of the human eye. These models could be use...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4657268/ https://www.ncbi.nlm.nih.gov/pubmed/26605357 http://dx.doi.org/10.1186/s40662-015-0011-9 |
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author | Williams, Dominic Zheng, Yalin Bao, Fangjun Elsheikh, Ahmed |
author_facet | Williams, Dominic Zheng, Yalin Bao, Fangjun Elsheikh, Ahmed |
author_sort | Williams, Dominic |
collection | PubMed |
description | BACKGROUND: Optical coherence tomography (OCT) is a non-invasive imaging system that can be used to obtain images of the anterior segment. Automatic segmentation of these images will enable them to be used to construct patient specific biomechanical models of the human eye. These models could be used to help with treatment planning and diagnosis of patients. METHODS: A novel graph cut technique using regional and shape terms was developed. It was evaluated by segmenting 39 OCT images of the anterior segment. The results of this were compared with manual segmentation and a previously reported level set segmentation technique. Three different comparison techniques were used: Dice’s similarity coefficient (DSC), mean unsigned surface positioning error (MSPE), and 95% Hausdorff distance (HD). A paired t-test was used to compare the results of different segmentation techniques. RESULTS: When comparison with manual segmentation was performed, a mean DSC value of 0.943 ± 0.020 was achieved, outperforming other previously published techniques. A substantial reduction in processing time was also achieved using this method. CONCLUSIONS: We have developed a new segmentation technique that is both fast and accurate. This has the potential to be used to aid diagnostics and treatment planning. |
format | Online Article Text |
id | pubmed-4657268 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-46572682015-11-24 Fast segmentation of anterior segment optical coherence tomography images using graph cut Williams, Dominic Zheng, Yalin Bao, Fangjun Elsheikh, Ahmed Eye Vis (Lond) Research BACKGROUND: Optical coherence tomography (OCT) is a non-invasive imaging system that can be used to obtain images of the anterior segment. Automatic segmentation of these images will enable them to be used to construct patient specific biomechanical models of the human eye. These models could be used to help with treatment planning and diagnosis of patients. METHODS: A novel graph cut technique using regional and shape terms was developed. It was evaluated by segmenting 39 OCT images of the anterior segment. The results of this were compared with manual segmentation and a previously reported level set segmentation technique. Three different comparison techniques were used: Dice’s similarity coefficient (DSC), mean unsigned surface positioning error (MSPE), and 95% Hausdorff distance (HD). A paired t-test was used to compare the results of different segmentation techniques. RESULTS: When comparison with manual segmentation was performed, a mean DSC value of 0.943 ± 0.020 was achieved, outperforming other previously published techniques. A substantial reduction in processing time was also achieved using this method. CONCLUSIONS: We have developed a new segmentation technique that is both fast and accurate. This has the potential to be used to aid diagnostics and treatment planning. BioMed Central 2015-01-22 /pmc/articles/PMC4657268/ /pubmed/26605357 http://dx.doi.org/10.1186/s40662-015-0011-9 Text en © Williams et al.; licensee BioMed Central. 2015 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Williams, Dominic Zheng, Yalin Bao, Fangjun Elsheikh, Ahmed Fast segmentation of anterior segment optical coherence tomography images using graph cut |
title | Fast segmentation of anterior segment optical coherence tomography images using graph cut |
title_full | Fast segmentation of anterior segment optical coherence tomography images using graph cut |
title_fullStr | Fast segmentation of anterior segment optical coherence tomography images using graph cut |
title_full_unstemmed | Fast segmentation of anterior segment optical coherence tomography images using graph cut |
title_short | Fast segmentation of anterior segment optical coherence tomography images using graph cut |
title_sort | fast segmentation of anterior segment optical coherence tomography images using graph cut |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4657268/ https://www.ncbi.nlm.nih.gov/pubmed/26605357 http://dx.doi.org/10.1186/s40662-015-0011-9 |
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