Cargando…

Functional prediction of hypothetical proteins in human adenoviruses

Assigning functional information to hypothetical proteins in virus genomes is crucial for gaining insight into their proteomes. Human adenoviruses are medium sized viruses that cause a range of diseases. Their genomes possess proteins with uncharacterized function known as hypothetical proteins. Usi...

Descripción completa

Detalles Bibliográficos
Autores principales: Dorden, Shane, Mahadevan, Padmanabhan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4658645/
https://www.ncbi.nlm.nih.gov/pubmed/26664031
http://dx.doi.org/10.6026/97320630011466
_version_ 1782402541805371392
author Dorden, Shane
Mahadevan, Padmanabhan
author_facet Dorden, Shane
Mahadevan, Padmanabhan
author_sort Dorden, Shane
collection PubMed
description Assigning functional information to hypothetical proteins in virus genomes is crucial for gaining insight into their proteomes. Human adenoviruses are medium sized viruses that cause a range of diseases. Their genomes possess proteins with uncharacterized function known as hypothetical proteins. Using a wide range of protein function prediction servers, functional information was obtained about these hypothetical proteins. A comparison of functional information obtained from these servers revealed that some of them produced functional information, while others provided little functional information about these human adenovirus hypothetical proteins. The PFP, ESG, PSIPRED, 3d2GO, and ProtFun servers produced the most functional information regarding these hypothetical proteins.
format Online
Article
Text
id pubmed-4658645
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Biomedical Informatics
record_format MEDLINE/PubMed
spelling pubmed-46586452015-12-09 Functional prediction of hypothetical proteins in human adenoviruses Dorden, Shane Mahadevan, Padmanabhan Bioinformation Hypothesis Assigning functional information to hypothetical proteins in virus genomes is crucial for gaining insight into their proteomes. Human adenoviruses are medium sized viruses that cause a range of diseases. Their genomes possess proteins with uncharacterized function known as hypothetical proteins. Using a wide range of protein function prediction servers, functional information was obtained about these hypothetical proteins. A comparison of functional information obtained from these servers revealed that some of them produced functional information, while others provided little functional information about these human adenovirus hypothetical proteins. The PFP, ESG, PSIPRED, 3d2GO, and ProtFun servers produced the most functional information regarding these hypothetical proteins. Biomedical Informatics 2015-10-31 /pmc/articles/PMC4658645/ /pubmed/26664031 http://dx.doi.org/10.6026/97320630011466 Text en © 2015 Biomedical Informatics This is an Open Access article which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. This is distributed under the terms of the Creative Commons Attribution License.
spellingShingle Hypothesis
Dorden, Shane
Mahadevan, Padmanabhan
Functional prediction of hypothetical proteins in human adenoviruses
title Functional prediction of hypothetical proteins in human adenoviruses
title_full Functional prediction of hypothetical proteins in human adenoviruses
title_fullStr Functional prediction of hypothetical proteins in human adenoviruses
title_full_unstemmed Functional prediction of hypothetical proteins in human adenoviruses
title_short Functional prediction of hypothetical proteins in human adenoviruses
title_sort functional prediction of hypothetical proteins in human adenoviruses
topic Hypothesis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4658645/
https://www.ncbi.nlm.nih.gov/pubmed/26664031
http://dx.doi.org/10.6026/97320630011466
work_keys_str_mv AT dordenshane functionalpredictionofhypotheticalproteinsinhumanadenoviruses
AT mahadevanpadmanabhan functionalpredictionofhypotheticalproteinsinhumanadenoviruses