Cargando…

Impact of SNPs on methylation readouts by Illumina Infinium HumanMethylation450 BeadChip Array: implications for comparative population studies

BACKGROUND: Infinium HumanMethylation 450 BeadChip Arrays by Illumina (Illumina HM450K) are among the most popular CpG microarray platforms widely used in biological and medical research. Several recent studies highlighted the potentially confounding impact of the genomic variation on the results of...

Descripción completa

Detalles Bibliográficos
Autores principales:	Daca-Roszak, Patrycja, Pfeifer, Aleksandra, Żebracka-Gala, Jadwiga, Rusinek, Dagmara, Szybińska, Aleksandra, Jarząb, Barbara, Witt, Michał, Ziętkiewicz, Ewa
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2015
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4659175/ https://www.ncbi.nlm.nih.gov/pubmed/26607064 http://dx.doi.org/10.1186/s12864-015-2202-0

Ejemplares similares

A framework for analyzing DNA methylation data from Illumina Infinium HumanMethylation450 BeadChip
por: Wang, Zhenxing, et al.
Publicado: (2018)

SWAN: Subset-quantile Within Array Normalization for Illumina Infinium HumanMethylation450 BeadChips
por: Maksimovic, Jovana, et al.
Publicado: (2012)

FastDMA: An Infinium HumanMethylation450 Beadchip Analyzer
por: Wu, Dingming, et al.
Publicado: (2013)

Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array
por: Price, E Magda, et al.
Publicado: (2013)

MGMIN: A Normalization Method for Correcting Probe Design Bias in Illumina Infinium HumanMethylation450 BeadChips
por: Wang, Zhenxing, et al.
Publicado: (2020)

Correlation of Infinium HumanMethylation450K and MethylationEPIC BeadChip arrays in cartilage
por: Cheung, Kathleen, et al.
Publicado: (2019)

Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) data
por: Morris, Tiffany J., et al.
Publicado: (2015)

Using Illumina Infinium HumanMethylation 450K BeadChip to explore genome-wide DNA methylation profiles in a human hepatocellular carcinoma cell line
por: Sun, Ning, et al.
Publicado: (2018)

ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip
por: Xu, Zongli, et al.
Publicado: (2016)

Genome-wide DNA methylation detection by MethylCap-seq and Infinium HumanMethylation450 BeadChips: an independent large-scale comparison
por: De Meyer, Tim, et al.
Publicado: (2015)

An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform
por: Marabita, Francesco, et al.
Publicado: (2013)

Batch-effect detection, correction and characterisation in Illumina HumanMethylation450 and MethylationEPIC BeadChip array data
por: Ross, Jason P., et al.
Publicado: (2022)

Genome-wide methylation profiling of early colorectal cancer using an Illumina Infinium Methylation EPIC BeadChip
por: Wu, Yu-Ling, et al.
Publicado: (2022)

The impact of low input DNA on the reliability of DNA methylation as measured by the Illumina Infinium MethylationEPIC BeadChip
por: Watkins, Sarah Holmes, et al.
Publicado: (2022)

Evaluation of pre-processing on the meta-analysis of DNA methylation data from the Illumina HumanMethylation450 BeadChip platform
por: Sala, Claudia, et al.
Publicado: (2020)

Identification of polymorphic and off-target probe binding sites on the Illumina Infinium MethylationEPIC BeadChip
por: McCartney, Daniel L., et al.
Publicado: (2016)

DNA methylation levels are highly correlated between pooled samples and averaged values when analysed using the Infinium HumanMethylation450 BeadChip array
por: Gallego-Fabrega, Cristina, et al.
Publicado: (2015)

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray
por: Chen, Yi-an, et al.
Publicado: (2013)

An evaluation of processing methods for HumanMethylation450 BeadChip data
por: Liu, Jie, et al.
Publicado: (2016)

A Comparison of the Whole Genome Approach of MeDIP-Seq to the Targeted Approach of the Infinium HumanMethylation450 BeadChip(®) for Methylome Profiling
por: Clark, Christine, et al.
Publicado: (2012)

R/Bioconductor software for Illumina's Infinium whole-genome genotyping BeadChips
por: Ritchie, Matthew E., et al.
Publicado: (2009)

Comparing genotyping algorithms for Illumina's Infinium whole-genome SNP BeadChips
por: Ritchie, Matthew E, et al.
Publicado: (2011)

Marmal-aid – a database for Infinium HumanMethylation450
por: Lowe, Robert, et al.
Publicado: (2013)

A novel principal component based method for identifying differentially methylated regions in Illumina Infinium MethylationEPIC BeadChip data
por: Zheng, Yuanchao, et al.
Publicado: (2023)

Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies
por: Needhamsen, Maria, et al.
Publicado: (2017)

Comparison of methylation patterns generated from genomic and cell-line derived DNA using the Illumina Infinium MethylationEPIC BeadChip array
por: Smyth, L. J., et al.
Publicado: (2019)

A comprehensive overview of Infinium HumanMethylation450 data processing
por: Dedeurwaerder, Sarah, et al.
Publicado: (2014)

A coherent approach for analysis of the Illumina HumanMethylation450 BeadChip improves data quality and performance in epigenome-wide association studies
por: Lehne, Benjamin, et al.
Publicado: (2015)

Identification of methylation states of DNA regions for Illumina methylation BeadChip
por: Luo, Ximei, et al.
Publicado: (2020)

Reliability of DNA methylation measures using Illumina methylation BeadChip
por: Xu, Zongli, et al.
Publicado: (2020)

Erratum to: A coherent approach for analysis of the Illumina HumanMethylation450 BeadChip improves data quality and performance in epigenome-wide association studies
por: Lehne, Benjamin, et al.
Publicado: (2016)

Comprehensive characterization, annotation and innovative use of Infinium DNA methylation BeadChip probes
por: Zhou, Wanding, et al.
Publicado: (2017)

Ewastools: Infinium Human Methylation BeadChip pipeline for population epigenetics integrated into Galaxy
por: Murat, Katarzyna, et al.
Publicado: (2020)

Reproducibility of the Infinium methylationEPIC BeadChip assay using low DNA amounts
por: Christiansen, Steffan Noe, et al.
Publicado: (2022)

Genome-wide DNA methylation profiling in human breast tissue by Illumina TruSeq methyl capture EPIC sequencing and infinium methylationEPIC beadchip microarray
por: Lin, Nan, et al.
Publicado: (2020)

ADMIRE: analysis and visualization of differential methylation in genomic regions using the Infinium HumanMethylation450 Assay
por: Preussner, Jens, et al.
Publicado: (2015)

SeSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions
por: Zhou, Wanding, et al.
Publicado: (2018)

Low-level processing of Illumina Infinium DNA Methylation BeadArrays
por: Triche, Timothy J., et al.
Publicado: (2013)

GMQN: A Reference-Based Method for Correcting Batch Effects and Probe Bias in HumanMethylation BeadChip
por: Xiong, Zhuang, et al.
Publicado: (2022)

ChAMP: updated methylation analysis pipeline for Illumina BeadChips
por: Tian, Yuan, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_7bu51r5ggtjg9l06hipmg7t3qe