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Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target

A search of broader range of chemical space is important for drug discovery. Different methods of computer-aided drug discovery (CADD) are known to propose compounds in different chemical spaces as hit molecules for the same target protein. This study aimed at using multiple CADD methods through ope...

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Autores principales: Chiba, Shuntaro, Ikeda, Kazuyoshi, Ishida, Takashi, Gromiha, M. Michael, Taguchi, Y-h., Iwadate, Mitsuo, Umeyama, Hideaki, Hsin, Kun-Yi, Kitano, Hiroaki, Yamamoto, Kazuki, Sugaya, Nobuyoshi, Kato, Koya, Okuno, Tatsuya, Chikenji, George, Mochizuki, Masahiro, Yasuo, Nobuaki, Yoshino, Ryunosuke, Yanagisawa, Keisuke, Ban, Tomohiro, Teramoto, Reiji, Ramakrishnan, Chandrasekaran, Thangakani, A. Mary, Velmurugan, D., Prathipati, Philip, Ito, Junichi, Tsuchiya, Yuko, Mizuguchi, Kenji, Honma, Teruki, Hirokawa, Takatsugu, Akiyama, Yutaka, Sekijima, Masakazu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4660442/
https://www.ncbi.nlm.nih.gov/pubmed/26607293
http://dx.doi.org/10.1038/srep17209
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author Chiba, Shuntaro
Ikeda, Kazuyoshi
Ishida, Takashi
Gromiha, M. Michael
Taguchi, Y-h.
Iwadate, Mitsuo
Umeyama, Hideaki
Hsin, Kun-Yi
Kitano, Hiroaki
Yamamoto, Kazuki
Sugaya, Nobuyoshi
Kato, Koya
Okuno, Tatsuya
Chikenji, George
Mochizuki, Masahiro
Yasuo, Nobuaki
Yoshino, Ryunosuke
Yanagisawa, Keisuke
Ban, Tomohiro
Teramoto, Reiji
Ramakrishnan, Chandrasekaran
Thangakani, A. Mary
Velmurugan, D.
Prathipati, Philip
Ito, Junichi
Tsuchiya, Yuko
Mizuguchi, Kenji
Honma, Teruki
Hirokawa, Takatsugu
Akiyama, Yutaka
Sekijima, Masakazu
author_facet Chiba, Shuntaro
Ikeda, Kazuyoshi
Ishida, Takashi
Gromiha, M. Michael
Taguchi, Y-h.
Iwadate, Mitsuo
Umeyama, Hideaki
Hsin, Kun-Yi
Kitano, Hiroaki
Yamamoto, Kazuki
Sugaya, Nobuyoshi
Kato, Koya
Okuno, Tatsuya
Chikenji, George
Mochizuki, Masahiro
Yasuo, Nobuaki
Yoshino, Ryunosuke
Yanagisawa, Keisuke
Ban, Tomohiro
Teramoto, Reiji
Ramakrishnan, Chandrasekaran
Thangakani, A. Mary
Velmurugan, D.
Prathipati, Philip
Ito, Junichi
Tsuchiya, Yuko
Mizuguchi, Kenji
Honma, Teruki
Hirokawa, Takatsugu
Akiyama, Yutaka
Sekijima, Masakazu
author_sort Chiba, Shuntaro
collection PubMed
description A search of broader range of chemical space is important for drug discovery. Different methods of computer-aided drug discovery (CADD) are known to propose compounds in different chemical spaces as hit molecules for the same target protein. This study aimed at using multiple CADD methods through open innovation to achieve a level of hit molecule diversity that is not achievable with any particular single method. We held a compound proposal contest, in which multiple research groups participated and predicted inhibitors of tyrosine-protein kinase Yes. This showed whether collective knowledge based on individual approaches helped to obtain hit compounds from a broad range of chemical space and whether the contest-based approach was effective.
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spelling pubmed-46604422015-12-02 Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target Chiba, Shuntaro Ikeda, Kazuyoshi Ishida, Takashi Gromiha, M. Michael Taguchi, Y-h. Iwadate, Mitsuo Umeyama, Hideaki Hsin, Kun-Yi Kitano, Hiroaki Yamamoto, Kazuki Sugaya, Nobuyoshi Kato, Koya Okuno, Tatsuya Chikenji, George Mochizuki, Masahiro Yasuo, Nobuaki Yoshino, Ryunosuke Yanagisawa, Keisuke Ban, Tomohiro Teramoto, Reiji Ramakrishnan, Chandrasekaran Thangakani, A. Mary Velmurugan, D. Prathipati, Philip Ito, Junichi Tsuchiya, Yuko Mizuguchi, Kenji Honma, Teruki Hirokawa, Takatsugu Akiyama, Yutaka Sekijima, Masakazu Sci Rep Article A search of broader range of chemical space is important for drug discovery. Different methods of computer-aided drug discovery (CADD) are known to propose compounds in different chemical spaces as hit molecules for the same target protein. This study aimed at using multiple CADD methods through open innovation to achieve a level of hit molecule diversity that is not achievable with any particular single method. We held a compound proposal contest, in which multiple research groups participated and predicted inhibitors of tyrosine-protein kinase Yes. This showed whether collective knowledge based on individual approaches helped to obtain hit compounds from a broad range of chemical space and whether the contest-based approach was effective. Nature Publishing Group 2015-11-26 /pmc/articles/PMC4660442/ /pubmed/26607293 http://dx.doi.org/10.1038/srep17209 Text en Copyright © 2015, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Chiba, Shuntaro
Ikeda, Kazuyoshi
Ishida, Takashi
Gromiha, M. Michael
Taguchi, Y-h.
Iwadate, Mitsuo
Umeyama, Hideaki
Hsin, Kun-Yi
Kitano, Hiroaki
Yamamoto, Kazuki
Sugaya, Nobuyoshi
Kato, Koya
Okuno, Tatsuya
Chikenji, George
Mochizuki, Masahiro
Yasuo, Nobuaki
Yoshino, Ryunosuke
Yanagisawa, Keisuke
Ban, Tomohiro
Teramoto, Reiji
Ramakrishnan, Chandrasekaran
Thangakani, A. Mary
Velmurugan, D.
Prathipati, Philip
Ito, Junichi
Tsuchiya, Yuko
Mizuguchi, Kenji
Honma, Teruki
Hirokawa, Takatsugu
Akiyama, Yutaka
Sekijima, Masakazu
Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target
title Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target
title_full Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target
title_fullStr Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target
title_full_unstemmed Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target
title_short Identification of potential inhibitors based on compound proposal contest: Tyrosine-protein kinase Yes as a target
title_sort identification of potential inhibitors based on compound proposal contest: tyrosine-protein kinase yes as a target
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4660442/
https://www.ncbi.nlm.nih.gov/pubmed/26607293
http://dx.doi.org/10.1038/srep17209
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